Publication result detail

DNA reads feature extraction analysis

JUGAS, R.

Original Title

DNA reads feature extraction analysis

English Title

DNA reads feature extraction analysis

Type

Paper in proceedings (conference paper)

Original Abstract

As the price of genome sequencing decreased, the complete genome sequencing is the new standard for exploring biological abilities of organisms. The commonly known contaminants like proteins and RNA are efficiently ousted but there is another contaminant which is diverse DNA. DNA contaminants are common in sequencing output and until recently nobody reckons with it, they are also part of already published genomes. The paper deals with issues by using alternative approach of genomic signal processing and other computational methods. The main objective is to detect contaminants in sequencing output and evaluate the analyses of usable features.

English abstract

As the price of genome sequencing decreased, the complete genome sequencing is the new standard for exploring biological abilities of organisms. The commonly known contaminants like proteins and RNA are efficiently ousted but there is another contaminant which is diverse DNA. DNA contaminants are common in sequencing output and until recently nobody reckons with it, they are also part of already published genomes. The paper deals with issues by using alternative approach of genomic signal processing and other computational methods. The main objective is to detect contaminants in sequencing output and evaluate the analyses of usable features.

Keywords

sequencing; genomic signal processing; features; contaminants; clustering; PCA; bioinformatics

Key words in English

sequencing; genomic signal processing; features; contaminants; clustering; PCA; bioinformatics

Authors

JUGAS, R.

RIV year

2018

Released

29.08.2017

ISBN

978-80-214-5526-9

Book

Proceedings of IEEE Student Branch Conference Mikulov 2017

Pages from

33

Pages to

36

Pages count

4

BibTex

@inproceedings{BUT138754,
  author="Robin {Jugas}",
  title="DNA reads feature extraction analysis",
  booktitle="Proceedings of IEEE Student Branch Conference Mikulov 2017",
  year="2017",
  number="1",
  pages="33--36",
  isbn="978-80-214-5526-9"
}