Publication detail

HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms

MUSILOVÁ, J.

Original Title

HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms

Type

conference paper

Language

English

Original Abstract

In this paper, I present the R package HomologSearch. The package serves for searching similarities between two sequences (protein or nucleotide) in a fasta format. The evaluation is computed using the BLAST algorithm and output is a table of homologous locus tags and genes (if available). The HomologSearch is available in the GitHub repository under the name ‘Jana-Mus/HomologSearch’ and can be installed as a library into the R language.

Keywords

R package; sequence similarity; sequence homology

Authors

MUSILOVÁ, J.

Released

23. 4. 2020

Publisher

Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií

Location

Brno

ISBN

978-80-214-5867-3

Book

Proceeding I of the 26th Conference STUDENT EEICT 2020

Edition number

1

Pages from

334

Pages to

338

Pages count

5

URL

https://www.fekt.vut.cz/conf/EEICT/archiv/sborniky/EEICT_2020_sbornik_1.pdf

BibTex

@inproceedings{BUT164301,
  author="Jana {Musilová}",
  title="HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and
Non-model Organisms",
  booktitle="Proceeding I of the 26th Conference STUDENT EEICT 2020",
  year="2020",
  number="1",
  pages="334--338",
  publisher="Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií",
  address="Brno",
  isbn="978-80-214-5867-3",
  url="https://www.fekt.vut.cz/conf/EEICT/archiv/sborniky/EEICT_2020_sbornik_1.pdf"
}