Publication detail

JBUKER: AN OPEN SOURCE JAVA LIBRARY FOR READING AND WRITING BRUKER MAGNETIC RESONANCE IMAGING AND SPECTROSCOPY DATASETS

SHAMAEI, A.

Original Title

JBUKER: AN OPEN SOURCE JAVA LIBRARY FOR READING AND WRITING BRUKER MAGNETIC RESONANCE IMAGING AND SPECTROSCOPY DATASETS

Type

conference paper

Language

English

Original Abstract

Data accessing and management are critical factors of every magnetic resonance imaging and spectroscopy experiment. Easy accessing and handling datasets enables researchers to comprehend the structure of experiments and increases the convenience and speed of processing workflows. Bruker Biospin MRI system is the widely-used preclinical system in small animal measurements. The system stores acquired data in Bruker's proprietary format via ParaVision software. Even though Bruker datasets' structure is transparent, and several tools have been developed, there is no comprehensive solution to the Bruker raw data accessing problem. In particular, current tools do not provide the feature to access MR Spectroscopic Imaging dataset. This study will cover all the advantages and disadvantages of existing tools and then introduce our solution as an open-source application programming interface to allow direct access and handling of raw Bruker datasets. In the end, we will show a use case of our library in a well-developed software for CSI data sets quantification.

Keywords

nuclear magnetic resonance; magnetic resonance imaging; magnetic resonance spectroscopy; magnetic resonance spectroscopy imaging; open-source, data analysis

Authors

SHAMAEI, A.

Released

16. 12. 2020

Publisher

MAGNANIMITAS

Location

Hradec Králové, Česká republika

ISBN

978-80-87952-33-7

Book

INTERNATIONAL MASARYK CONFERENCE FOR PH.D. STUDENTS AND YOUNG RESEARCHERS

Edition

1

Edition number

1

Pages from

1218

Pages to

1224

Pages count

7

URL

https://www.vedeckekonference.cz/index.php?option=com_content&view=article&id=88&Itemid=77&lang=en

BibTex

@inproceedings{BUT168282,
  author="Amirmohammad {Shamaei}",
  title="JBUKER: AN OPEN SOURCE JAVA LIBRARY FOR READING AND
WRITING BRUKER MAGNETIC RESONANCE IMAGING AND
SPECTROSCOPY DATASETS",
  booktitle="INTERNATIONAL MASARYK CONFERENCE FOR PH.D.
STUDENTS AND YOUNG RESEARCHERS",
  year="2020",
  series="1",
  number="1",
  pages="1218--1224",
  publisher="MAGNANIMITAS",
  address="Hradec Králové, Česká republika",
  isbn="978-80-87952-33-7",
  url="https://www.vedeckekonference.cz/index.php?option=com_content&view=article&id=88&Itemid=77&lang=en"
}