Publication detail

Running Large-Scale Ultrasound Simulations on Intel Xeon Phi (KNC) accelerators

VAVERKA, F. TREEBY, B. JAROŠ, J.

Original Title

Running Large-Scale Ultrasound Simulations on Intel Xeon Phi (KNC) accelerators

Type

presentation, poster

Language

English

Original Abstract

Large-scale ultrasound simulations has excited high interest in medical applications such as HIFU treatment or Photoacoustic imaging. However, routine execution of such simulations using traditional computational methods such as finite difference methods is considered intractable due to the size of required data sets. The k-Wave (k-space pseudo-spectral based ultrasound wave propagation solver) toolbox alleviates the computational and memory requirements by significantly reducing the spatial and temporal grid resolution, however, for the cost of a large amount of global all-to-all communication. To improve data locality, reduce data movements and allow an efficient use of accelerators, we introduce a local domain decomposition using local Fourier basis. In this article we investigate behavior of k-Wave in local domain decomposition variant running on the Salomon cluster using the Intel Xeon Phi (KNC) accelerators which constitute about 50\% of cluster's 2 Pflop/s R-Peak performance.

Keywords

Ultrasound simulations, Local Fourier basis decomposition, k-Wave toolbox, Intel Xeon Phi (KNC), MKL, MPI, OpenMP

Authors

VAVERKA, F.; TREEBY, B.; JAROŠ, J.

Released

7. 11. 2018

Location

Ostrava

Pages from

1

Pages to

1

Pages count

1

URL

https://www.fit.vut.cz/research/publication/11865/

BibTex

@misc{BUT168719,
  author="Filip {Vaverka} and Bradley {Treeby} and Jiří {Jaroš}",
  title="Running Large-Scale Ultrasound Simulations on Intel Xeon Phi (KNC) accelerators",
  year="2018",
  pages="1--1",
  address="Ostrava",
  url="https://www.fit.vut.cz/research/publication/11865/",
  note="presentation, poster"
}

Documents

poster.pdf