Přístupnostní navigace
E-application
Search Search Close
Publication detail
HAVLÍK, J. BRÁZDA, V. STANĚK, K. JEŽEK, M. ŠŤASTNÝ, J.
Original Title
Feature-overlapper: The tool for DNA analysis overlap
Type
journal article in Web of Science
Language
English
Original Abstract
This contribution puts focus on a command line tool, which enables detection and analysis of overlapping regions between G-quadruplexes, R-loops and genome annotations for selected genomes. G-quadruplexes and R-loops are structures with high Guanine density, which is an important creation factor for both structures. Common regions (overlap) between both structures can provide us with better possibility to create precise model to detect R-loops and valuable insights when inspecting genome annotations with high R-loop density. The tool was used for multiple research projects and is under constant development bringing new features to the world of bioinformatics.
Keywords
DNA; R-loop; G-quadruplex; Annotation
Authors
HAVLÍK, J.; BRÁZDA, V.; STANĚK, K.; JEŽEK, M.; ŠŤASTNÝ, J.
Released
1. 5. 2023
Publisher
Elsevier
Location
AMSTERDAM
ISBN
2665-9638
Periodical
Software Impacts
Year of study
16
Number
5
State
Kingdom of the Netherlands
Pages from
1
Pages to
4
Pages count
URL
https://www.sciencedirect.com/science/article/pii/S2665963823000350?via%3Dihub
Full text in the Digital Library
http://hdl.handle.net/11012/213660
BibTex
@article{BUT183463, author="Jan {Havlík} and Václav {Brázda} and Kamil {Staněk} and Michal {Ježek} and Jiří {Šťastný}", title="Feature-overlapper: The tool for DNA analysis overlap", journal="Software Impacts", year="2023", volume="16", number="5", pages="4", doi="10.1016/j.simpa.2023.100498", issn="2665-9638", url="https://www.sciencedirect.com/science/article/pii/S2665963823000350?via%3Dihub" }