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MUSILOVÁ, J. KOUŘILOVÁ, X. HEŘMÁNKOVÁ, K. BEZDÍČEK, M. IEREMENKO, A. DVOŘÁK, P. OBRUČA, S. SEDLÁŘ, K.
Original Title
Genomic and Phenotypic Comparison of Polyhydroxyalkanoates Producing Strains of genus Caldimonas/Schlegelella
Type
journal article in Web of Science
Language
English
Original Abstract
Polyhydroxyalkanoates (PHAs) have emerged as an environmentally friendly alternative to conventional polyesters. In this study, we present a comprehensive analysis of the genomic and phenotypic characteristics of three non-model thermophilic bacteria known for their ability to produce PHAs: Schlegelella aquatica LMG 23380T, Caldimonas thermodepolymerans DSM 15264, and C. thermodepolymerans LMG 21645 and the results were compared with the type strain C. thermodepolymerans DSM 15344T. We have assembled the first complete genomes of these three bacteria and performed the structural and functional annotation. This analysis has provided valuable insights into the biosynthesis of PHAs and has allowed us to propose a comprehensive scheme of carbohydrate metabolism in the studied bacteria. Through phylogenomic analysis, we have confirmed the synonymity between Caldimonas and Schlegelella genera, and further demonstrated that S. aquatica and S. koreensis, currently classified as orphan species, belong to the Caldimonas genus.
Keywords
Caldimonas; Schlegelella; de novo assembly; PHAs; Next-Generation Industrial Biotechnology; LMG 23380T; DSM 15264; LMG 21645; DSM 15344T
Authors
MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; IEREMENKO, A.; DVOŘÁK, P.; OBRUČA, S.; SEDLÁŘ, K.
Released
30. 10. 2023
Publisher
Elsevier
ISBN
2001-0370
Periodical
Computational and Structural Biotechnology Journal
Year of study
21
Number
November
State
Kingdom of Sweden
Pages from
5372
Pages to
5381
Pages count
10
URL
https://www.sciencedirect.com/science/article/pii/S2001037023004075
Full text in the Digital Library
http://hdl.handle.net/11012/244318
BibTex
@article{BUT185013, author="Jana {Musilová} and Xenie {Kouřilová} and Kristýna {Heřmánková} and Matěj {Bezdíček} and Anastasiia {Ieremenko} and Pavel {Dvořák} and Stanislav {Obruča} and Karel {Sedlář}", title="Genomic and Phenotypic Comparison of Polyhydroxyalkanoates Producing Strains of genus Caldimonas/Schlegelella", journal="Computational and Structural Biotechnology Journal", year="2023", volume="21", number="November", pages="5372--5381", doi="10.1016/j.csbj.2023.10.051", issn="2001-0370", url="https://www.sciencedirect.com/science/article/pii/S2001037023004075" }