Přístupnostní navigace
E-application
Search Search Close
Publication detail
PROVAZNÍK, I. KUBICOVÁ, V. ŠKUTKOVÁ, H. NEDVĚD, J. TKACZ, E. BABULA, P. KIZEK, R.
Original Title
Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features
Type
conference paper
Language
English
Original Abstract
The paper presents a novel improvement of a spectral method used for detection of short coding regions in genes. The complex representation of four nucleotides involving three basic chemical and structural properties is used for conversion of a symbolic sequence into a genomic signal. Another genomic signal is generated from dinucleotide propeller twist. Filtered complex combination of both signals is transformed by a complex continuous wavelet transform. Its results were analysed both in amplitude and phase parts. Experimental results obtained by this method are shown to be comparable or better than recently published methods based on the selected set of genes.
Keywords
Exon detection, DNA structure, wavelet analysis, DNA sequence analysis
Authors
PROVAZNÍK, I.; KUBICOVÁ, V.; ŠKUTKOVÁ, H.; NEDVĚD, J.; TKACZ, E.; BABULA, P.; KIZEK, R.
RIV year
2012
Released
5. 11. 2012
ISBN
978-1-4673-0491-7
Book
Proceedings of IEEE International Workshop on Genomic Signal Processing and Statistics 2012
Pages from
1
Pages to
4
Pages count
BibTex
@inproceedings{BUT94918, author="Valentine {Provazník} and Vladimíra {Kubicová} and Helena {Vítková} and Jiří {Nedvěd} and Ewaryst {Tkacz} and Petr {Babula} and René {Kizek}", title="Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features", booktitle="Proceedings of IEEE International Workshop on Genomic Signal Processing and Statistics 2012", year="2012", pages="1--4", isbn="978-1-4673-0491-7" }