Detail publikace

Clustering of Klebsiella Strains Based on Variability in Sequencing Data

BARTOŇ, V. NYKRÝNOVÁ, M. BEZDÍČEK, M. LENGEROVÁ, M. ŠKUTKOVÁ, H.

Originální název

Clustering of Klebsiella Strains Based on Variability in Sequencing Data

Typ

článek ve sborníku ve WoS nebo Scopus

Jazyk

angličtina

Originální abstrakt

Genotyping is a method necessary to distinguish between strains of bacteria. Using whole sequences for analysis is a computational demanding and time-consuming approach. We establish a workflow to convert sequences to a numerical signal representing the variability of sequences. After segmentation and using only parts of the signals, they have still enough information to form a topologically according to the clustering structure.

Klíčová slova

Genotyping; Klebsiella pneumoniae; Variability signal; Numerical processing;

Autoři

BARTOŇ, V.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H.

Vydáno

13. 4. 2019

ISBN

978-3-030-17934-2

Kniha

Bioinformatics and Biomedical Engineering. IWBBIO 2019.

Číslo edice

11466

ISSN

0302-9743

Periodikum

Lecture Notes in Computer Science

Stát

Spolková republika Německo

Strany od

189

Strany do

199

Strany počet

11

BibTex

@inproceedings{BUT156910,
  author="Vojtěch {Bartoň} and Markéta {Jakubíčková} and Matěj {Bezdíček} and Martina {Lengerová} and Helena {Vítková}",
  title="Clustering of Klebsiella Strains Based on Variability in Sequencing Data",
  booktitle="Bioinformatics and Biomedical Engineering. IWBBIO 2019.",
  year="2019",
  journal="Lecture Notes in Computer Science",
  number="11466",
  pages="189--199",
  doi="10.1007/978-3-030-17935-9\{_}18",
  isbn="978-3-030-17934-2",
  issn="0302-9743"
}