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SCHWARZEROVÁ, J. RAJASEKARAN, L. JUREČKOVÁ, K. NEJEZCHLEBOVÁ, J. VARGA, M. PROVAZNÍK, V. WECKWERTH, W. ČEJKOVÁ, D.
Originální název
Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria
Typ
článek ve sborníku ve WoS nebo Scopus
Jazyk
angličtina
Originální abstrakt
Horizontal Gene Transfer (HGT) plays an important and indispensable role in the evolution of bacterial genomes, serving as a mechanism that contributes to genetic diversity and enables adaptation across phylogenetically distant taxa. This study introduces an analysis tool implemented as an R package for detecting HGT events in diverse bacterial lineages. The tool combines the integration of a heat-map matrix with phylogenetic analysis visualization techniques to enhance the accuracy and efficiency of HGT event detection. We applied it to a diverse set of bacterial genomes from chicken and pig gut and expanded the results with established methods for HGT detection. The findings demonstrate the capability of our visualization techniques to pinpoint HGT events, offering a valuable tool for researchers to explore the intricate dynamics of bacterial genome evolution.
Klíčová slova
Mobilome; Bioinformatics Data Visualization; Interspecies Gene Transfer; Advanced Comparative Phylogenetics
Autoři
SCHWARZEROVÁ, J.; RAJASEKARAN, L.; JUREČKOVÁ, K.; NEJEZCHLEBOVÁ, J.; VARGA, M.; PROVAZNÍK, V.; WECKWERTH, W.; ČEJKOVÁ, D.
Vydáno
28. 8. 2024
Nakladatel
Springer Nature
ISBN
978-3-031-64636-2
Kniha
Lecture Notes in Bioinformatics
Edice
14849
Číslo edice
II.
ISSN
1611-3349
Periodikum
Lecture Notes in Computer Science
Ročník
Číslo
Stát
Italská republika
Strany od
267
Strany do
277
Strany počet
11
URL
https://link.springer.com/chapter/10.1007/978-3-031-64636-2_20
BibTex
@inproceedings{BUT189428, author="Jana {Schwarzerová} and Laxmipriya {Rajasekaran} and Kateřina {Šabatová} and Julie {Nejezchlebová} and Margaret {Varga} and Valentine {Provazník} and Wolfram {Weckwerth} and Darina {Čejková}", title="Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria", booktitle="Lecture Notes in Bioinformatics", year="2024", series="14849", journal="Lecture Notes in Computer Science", volume="14849", number="II.", pages="267--277", publisher="Springer Nature", doi="10.1007/978-3-031-64636-2\{_}20", isbn="978-3-031-64636-2", issn="1611-3349", url="https://link.springer.com/chapter/10.1007/978-3-031-64636-2_20" }