Publications

• 2023

  ODSTRČILÍK, J.; KOLÁŘ, R.; HORN, F.; TORNOW, R. Comparative analysis of retinal photoplethysmographic spatial maps and thickness of retinal nerve fiber layer. PLOS ONE, 2023, vol. 18, no. 5, p. 1-15. ISSN: 1932-6203.
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  KOLÁŘ, R.; VIČAR, T.; CHMELÍK, J.; JAKUBÍČEK, R.; ODSTRČILÍK, J.; VALTEROVÁ, E.; NOHEL, M.; SKORKOVSKÁ, K.; TORNOW, R. Assessment of retinal vein pulsation through video-ophthalmoscopy and simultaneous biosignals acquisition. Biomedical Optics Express, 2023, vol. 14, no. 6, p. 2645-2657. ISSN: 2156-7085.
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  TORNOW, R.; ODSTRČILÍK, J.; KOLÁŘ, R. A multi-color video-ophthalmoscopes allows to measure the spectral distribution of light absorption of blood in the human retina. Frontiers in Medicine, 2023, vol. 10, no. 1, p. 1-6. ISSN: 2296-858X.
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• 2022

  KOLÁŘ, R.; VIČAR, T.; ODSTRČILÍK, J.; VALTEROVÁ, E.; KRÁLÍK, M.; TORNOW, R. Multispectral retinal video-ophthalmoscope with fiber optic illumination. Journal of Biophotonics, 2022, vol. 15, no. 9, ISSN: 1864-0648.
  Detail | WWW

• 2021

  LABOUNKOVÁ, I.; LABOUNEK, R.; NESTRAŠIL, I.; ODSTRČILÍK, J.; TORNOW, R.; KOLÁŘ, R. Blind Source Separation of Retinal Pulsatile Patterns in Optic Nerve Head Video-Recordings. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2021, vol. 40, no. 3, p. 852-864. ISSN: 0278-0062.
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  KOLÁŘ, R.; ODSTRČILÍK, J.; TORNOW, R. Photoplethysmographic analysis of retinal videodata based on the Fourier domain approach. Biomedical Optics Express, 2021, vol. 12, no. 12, p. 7405-7421. ISSN: 2156-7085.
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• 2020

  TORNOW, R.; KOLÁŘ, R.; ODSTRČILÍK, J.; LABOUNKOVÁ, I.; HORN, F. Imaging video plethysmography shows reduced signal amplitude in glaucoma patients in the area of the microvascular tissue of the optic nerve head. GRAEFES ARCHIVE FOR CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY, 2020, no. 1, p. 1-12. ISSN: 0721-832X.
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• 2019

  LABOUNKOVÁ, I.; LABOUNEK, R.; ODSTRČILÍK, J.; HRACHO, M.; NESTRAŠIL, I.; TORNOW, R.; KOLÁŘ, R. Retinal pulsatile shift enhancement with blind source separation. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE - ARVO 2019. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE. 2019. p. 1-3. ISSN: 0146-0404.
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  KOLÁŘ, R.; ODSTRČILÍK, J.; LABOUNKOVÁ, I.; HRACHO, M.; TORNOW, R. Eye movement analysis using a binocular video-ophthalmoscope. In Proceedings of IEEE Engineering in Medicine and Biology Conference. Proceedings IEEE EMBC. 2019. p. 4725-4728. ISSN: 1557-170X.
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  LABOUNKOVÁ, I.; LABOUNEK, R.; ODSTRČILÍK, J.; HRACHO, M.; NESTRAŠIL, I.; TORNOW, R.; KOLÁŘ, R. Blind Source Separation of Different Retinal Pulsatile Patterns from Simultaneous Long-term Binocular Ophthalmoscopic Video-records. In Proceedings of IEEE Engineering in Medicine and Biology Conference. Proceedings IEEE EMBC. 2019. p. 4729-4732. ISSN: 1557-170X.
  Detail | WWW

• 2018

  KOLÁŘ, R.; TORNOW, R.; HORN, F.; ODSTRČILÍK, J. Development of a binocular video-ophthalmoscope to compare parameters of heart beat induced blood volume changes between both eyes. USA: Association for Research in Vision and Ophthalmology, 2018. p. 5859-5859.
  Detail | WWW

  TORNOW, R.; ODSTRČILÍK, J.; KOLÁŘ, R. Time-resolved quantitative inter-eye comparison of cardiac cycle-induced blood volume changes in the human retina. Biomedical Optics Express, 2018, vol. 9, no. 12, p. 6237-6254. ISSN: 2156-7085.
  Detail | WWW

  HRACHO, M.; KOLÁŘ, R.; LABOUNKOVÁ, I.; ODSTRČILÍK, J.; TORNOW, R. Automatic detection of spontaneous venous pulsations using retinal image sequences. In Proceedings of the IV ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing: VipIMAGE 2017. Taylor and Francis, Publication, 2018. p. 827-833. ISBN: 978-3-319-68194-8.
  Detail | WWW

• 2017

  TORNOW, R.; MILCZAREK, A.; ODSTRCILIK, J.; KOLAR, R. Binocular video ophthalmoscope for simultaneous recording of sequences of the human retina to compare dynamic parameters. In SPIE Proceedings (Optical Society of America). Novel Biophotonics Techniques and Applications IV. Mnichov: 2017. p. 1-6. ISBN: 9781510612846.
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  ROY, S.; GUMULEC, J.; KUMAR, A.; RAUDENSKÁ, M.; BAIG, M.; POLANSKÁ, H.; BALVAN, J.; GUPTA, M.; BABULA, P.; ODSTRČILÍK, J.; CHOI, I.; PROVAZNÍK, I.; MASAŘÍK, M. The effect of Benzothiazolone-2 on the expression of Metallothionein-3 in modulating Alzheimer's disease. Brain and Behavior, 2017, vol. 7, no. 9, p. 1-9. ISSN: 2162-3279.
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  KOLÁŘ, R.; LABOUNKOVÁ, I.; ODSTRČILÍK, J.; HRACHO, M.; TORNOW, R. Detection of distorted frames in retinal video-sequences via machine learning. In SPIE Proceedings (Optical Society of America). Novel Biophotonics Techniques and Applications IV. SPIE-OSA, 2017. p. 1-4. ISBN: 9781510612846.
  Detail

• 2016

  KOLÁŘ, R.; TORNOW, R.; ODSTRČILÍK, J.; LIBERDOVÁ, I. Registration of retinal sequences from new video-ophthalmoscopic camera. BIOMED ENG ONLINE, 2016, vol. 15, no. 57, p. 1-17. ISSN: 1475-925X.
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  VERMA, P.; ANJUM, S.; KHAN, S.; ROY, S.; ODSTRČILÍK, J.; MATHUR, A. Envisaging the Regulation of Alkaloid Biosynthesis and Associated Growth Kinetics in Hairy Roots of Vinca minor Through the Function of Artificial Neural Network. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2016, vol. 2016, no. 6, p. 1154-1166. ISSN: 0273-2289.
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• 2015

  ODSTRČILÍK, J.; KOLÁŘ, R.; HARABIŠ, V.; TORNOW, R. Classification- Based Blood Vessel Segmentation in Retinal Images. In Computational Vision and Medical Image Processing V. London, UK: CRC Press Taylor and Francis Group, 2015. p. 95-100. ISBN: 978-1-138-02926- 2.
  Detail

  ODSTRČILÍK, J.; ČMIEL, V.; KOLÁŘ, R.; RONZHINA, M.; BAIAZITOVA, L.; PEŠL, M.; PŘIBYL, J.; PROVAZNÍK, I. Computer Analysis of Isolated Cardiomyocyte Contraction Process via Advanced, Image Processing Techniques. In Computing in Cardiology 2015. 42. Nice, France: Computing in Cardiology, Inc., 2015. p. 453-456. ISBN: 978-1-4799-4347- 0.
  Detail

  ODSTRČILÍK, J.; KOLÁŘ, R.; TORNOW, R.; BUDAI, A.; JAN, J.; MACKOVÁ, P.; VODÁKOVÁ, M. Analysis of the Retinal Nerve Fiber Layer Texture Related to the Thickness Measured by Optical Coherence Tomography. In Developments in Medical Image Processing and Computational Vision. Lecture Notes in Computational Vision and Biomechanics. Switzerland: Springer International Publishing, 2015. p. 19-40. ISBN: 978-3-319-13406-2.
  Detail | WWW

  TORNOW, R.; KOLÁŘ, R.; ODSTRČILÍK, J. Non- mydriatic video ophthalmoscope to measure fast temporal changes of the human retina. In Proceedings of SPIE, Volume 9540. 2015. p. 954006 (954006-6 p.)ISBN: 9781628417050.
  Detail

  KOLÁŘ, R.; TORNOW, R.; ODSTRČILÍK, J. Video ophthalmoscope measures fast temporal changes in the human retina. SPIE Newsroom, 2015, no. 2015, p. 1-2. ISSN: 1818- 2259.
  Detail

  ČMIEL, V.; ODSTRČILÍK, J.; RONZHINA, M.; PROVAZNÍK, I. Real-time measurement of cardiomyocyte contraction and calcium transients using fast image processing algorithms. In World Congress on Medical Physics and Biomedical Engineering. IFMBE PROCEEDINGS. Springer International Publishing, 2015. p. 256-259. ISBN: 978-3-319-19386-1. ISSN: 1680-0737.
  Detail

  HÁJEK, J.; DRAHANSKÝ, M.; KOLÁŘ, R.; ODSTRČILÍK, J.; BOROVSKÝ, J. Bimodal eye imaging system. In Signal-Image Technology and Internet-Based Systems. Bangkok: Institute of Electrical and Electronics Engineers, 2015. p. 572-575. ISBN: 978-1-4673-9721-6.
  Detail | WWW

  KOLÁŘ, R.; SEMERÁD, L.; DRAHANSKÝ, M.; ODSTRČILÍK, J.; HÁJEK, J.; BOROVSKÝ, J. Bimodal Eye Imaging System for Biometric and Medical Applications. Security and Protection of Information 2015. Brno: University of Defence in Brno, 2015. p. 83-95. ISBN: 978-80-7231-997-8.
  Detail

  ČMIEL, V.; ODSTRČILÍK, J.; SVOBODA, O.; BAIAZITOVA, L.; PROVAZNÍK, I. Method for Adult Cardiomyocytes Long- Term Viability Monitoring Using Confocal Microscopy Techniques. In Computing in Cardiology 2015. 42. Nice, France: Computing in Cardiology, Inc., 2015. p. 961-964. ISBN: 978-1-4799-4347- 0.
  Detail

  KOLÁŘ, R.; TORNOW, R.; ODSTRČILÍK, J. Retinal Image Registration for Eye Movement Estimation. In Proceedings of IEEE EMBC. Proceedings IEEE EMBC. 2015. p. 5247-5250. ISBN: 978-1-4244-9270-1. ISSN: 1557-170X.
  Detail | WWW

• 2014

  KOLÁŘ, R.; HOEHER, B.; ODSTRČILÍK, J.; SCHMAUSS, B.; JAN, J. Registration of image sequences from experimental low-cost fundus camera. In Biomedical Image Registration. Lecture Notes in Computer Science. London: Springer International Publishing, 2014. p. 174-183. ISBN: 978-3-319-08553-1.
  Detail | WWW

  ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; TORNOW, R.; BUDAI, A. Blood Vessel Segmentation in Video- Sequences From the Human Retina. In 2014 IEEE International Conference on Imaging Systems and Techniques (IST) Proceedings. Santorini, Greece: IEEE, 2014. p. 129-133. ISBN: 978-1-4799-6748- 3.
  Detail

  ODSTRČILÍK, J.; KOLÁŘ, R.; TORNOW, R.; JAN, J.; BUDAI, A.; MAYER, M.; VODÁKOVÁ, M.; LAEMMER, R.; LAMOŠ, M.; KUNA, Z.; GAZÁREK, J.; KUBĚNA, T.; ČERNOŠEK, P.; RONZHINA, M. Thickness related textural properties of retinal nerve fiber layer in color fundus images. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 2014, vol. 38, no. 6, p. 508-516. ISSN: 0895-6111.
  Detail | WWW | Full text in the Digital Library

• 2013

  KOLÁŘ, R.; ODSTRČILÍK, J.; MACKOVÁ, P.; LAEMMER, R. Registration of the long- term autofluorescence retinal images taken from glaucomatic patients. In Computational Vision and Medical Image Processing. London: Taylor & Francis, 2013. p. 115-119. ISBN: 978-1-138-00081- 0.
  Detail

  KOLÁŘ, R.; HARABIŠ, V.; ODSTRČILÍK, J. Hybrid retinal image registration using phase correlation. IMAGING SCIENCE JOURNAL, 2013, vol. 61, no. 4, p. 269-384. ISSN: 1368- 2199.
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  KÖHLER, T.; BUDAI, A.; KRAUS, M.; ODSTRČILÍK, J.; MICHELSON, G.; HORNEGGER, J. Automatic no- reference quality assessment for retinal fundus images using vessel segmentation. In 26th IEEE International Symposium on Computer- Based Medical Systems. 26. Porto, Portugalsko: University of Porto, 2013. p. 95-100. ISBN: 978-1-4799-1053- 3.
  Detail

  KOLÁŘ, R.; TORNOW, R.; LAEMMER, R.; ODSTRČILÍK, J.; GAZÁREK, J.; JAN, J.; KUBĚNA, T.; ČERNOŠEK, P.; MAYER, M. Analysis of Visual Appearance of Retinal Nerve Fibers in High Resolution Fundus Images: A Study on Normal Subjects. Computational and Mathematical Methods in Medicine (Print), 2013, vol. 2013, no. 12, p. 1-10. ISSN: 1748-670X.
  Detail | WWW | Full text in the Digital Library

  ODSTRČILÍK, J.; KOLÁŘ, R.; TORNOW, R.; BUDAI, A.; JAN, J.; MACKOVÁ, P.; VODÁKOVÁ, M. Analysis of the retinal nerve fiber layer texture related to the thickness measured by optical coherence tomography. In Computational Vision and Medical Image Processing IV. 4. London: Taylor & Francis Group, 2013. p. 105-110. ISBN: 978-1-138-00081- 0.
  Detail

  ODSTRČILÍK, J.; KOLÁŘ, R.; BUDAI, A.; HORNEGGER, J.; JAN, J.; GAZÁREK, J.; KUBĚNA, T.; ČERNOŠEK, P.; SVOBODA, O.; ANGELOPOULOU, E. Retinal Vessel Segmentation by Improved Matched Filtering: Evaluation on a New High– Resolution Fundus Image Database. IET Image Processing, 2013, vol. 7, no. 4, p. 373-383. ISSN: 1751- 9659.
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  ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; MACKOVÁ, P. Analýza obrazových dat sítnice pro podporu diagnostiky glaukomu. In Nové směry v biomedicínském inženýrství. 2013. Brno, ČR: Společnost elektrotechnického inženýrství, 2013. p. 81-92. ISBN: 978-80-214-4814- 8.
  Detail

  MACKOVÁ, P.; KOLÁŘ, R.; ODSTRČILÍK, J. Analýza geometrického zkreslení multimodálních obrazových dat sítnice. Elektrorevue - Internetový časopis (http://www.elektrorevue.cz), 2013, vol. 15, no. 5, p. 315-321. ISSN: 1213- 1539.
  Detail

• 2012

  JAN, J.; ODSTRČILÍK, J.; GAZÁREK, J.; KOLÁŘ, R. Retinal Image Analysis Aimed at Blood Vessel Tree Segmentation and Early Detection of Neural- Layer Deterioration. COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, 2012, vol. 2012, no. 6, p. 431-441. ISSN: 0895- 6111.
  Detail

  ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; GAZÁREK, J.; KUNA, Z.; VODÁKOVÁ, M. Analysis of retinal nerve fiber layer via Markov random fields in color fundus images. In Proceedings of 19th International Conference on Systems, Signals and Image Processing (IEEE - IWSSIP 2012). Vídeň, Rakousko: TU Wien, 2012. p. 504-507. ISBN: 978-1-4577-2191- 5.
  Detail

• 2011

  KOLÁŘ, R.; ODSTRČILÍK, J.; HARABIŠ, V.; JAN, J. Illumination Correction and Contrast Equalization in Colour Fundus Images. In 19th European Signal Processing Conference (EUSIPCO-2011). 18th European Signal Processing Conference (EUSIPCO-2010). EURASIP. Barcelona: EURASIP, 2011. p. 298-302. ISSN: 2076- 1465.
  Detail

  JAN, J.; KOLÁŘ, R.; KUBEČKA, L.; ODSTRČILÍK, J.; GAZÁREK, J. Ophthalmological Image Processing and Analysis in DAR - a survey. Abstracts of Contributions to 7th Intern. Workshop on Data - Algorithms - Decision making. 1. Praha: UTIA AVČR, 2011. p. 25-25.
  Detail

  BUDAI, A.; ODSTRČILÍK, J.; KOLÁŘ, R.; HORNEGGER, J.; JAN, J.; KUBĚNA, T.; MICHELSON, G. A Public Database for the Evaluation of Fundus Image Segmentation Algorithms. Proc. of the Association for Research in Vision and Ophthalmology conference (ARVO) 2011. ARVO 2011. Fort Lauderdale, Florida, USA: Association for Research in Vision and Ophthalmology, Inc., 2011. p. 1-2.
  Detail

  ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; BUDAI, A. Gold Standard Database to Support Evaluation of Fundus Image Segmentation Methods. Abstracts of Contributions to 7th International Workshop on Data-Algorithms- Decision Making. UTIA. Praha, ČR: UTIA AV ČR, 2011. p. 46-46.
  Detail

  JAN, J.; KOLÁŘ, R.; KUBEČKA, L.; ODSTRČILÍK, J.; GAZÁREK, J. FUSION BASED ANALYSIS OF OPHTHALMOLOGIC IMAGE DATA. Kybernetika, 2011, vol. 47 (2011), no. 3, p. 455-481. ISSN: 0023- 5954.
  Detail

• 2010

  ODSTRČILÍK, J.; KOLÁŘ, R.; HARABIŠ, V.; GAZÁREK, J.; JAN, J. Retinal Nerve Fiber Layer Analysis via Markov Random Fields Texture Modelling. In 18th European Signal Processing Conference (EUSIPCO-2010). 18th European Signal Processing Conference (EUSIPCO-2010). EURASIP. EURASIP, 2010. p. 1650-1654. ISSN: 2076- 1465.
  Detail

  ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J.; GAZÁREK, J. Retinal nerve fiber layer texture analysis via markov random fields. Abstracts of Contributions to 6th International Workshop on Data-Algorithms- Decision Making. UTIA. Praha, ČR: UTIA AV ČR, 2010. p. 49-49.
  Detail

  NOVOTNÝ, A.; ODSTRČILÍK, J.; KOLÁŘ, R.; JAN, J. Texture Analysis Of Nerve Fibre Layer In Retinal Images Via Local Binary Patterns And Gaussian Markov Random Fields. In 20th Biennial International EURASIP Conference BIOSIGNAL 2010. Analysis of Biomedical Signals and Images. EURASIP. Brno: EURASIP, 2010. p. 308-315. ISBN: 978-80-214-4106- 4. ISSN: 1211- 412X.
  Detail

  GAZÁREK, J.; JAN, J.; KOLÁŘ, R.; ODSTRČILÍK, J. Bimodal Comparison of Retinal Nerve Fibre Layer Thickness: Fundus Camera versus Optical Coherence Tomography. Abstracts of Contributions to 6th International Workshop on Data-Algorithms- Decision Making. UTIA. Praha, ČR: UTIA AV ČR, 2010. p. 50-50.
  Detail

• 2009

  ODSTRČILÍK, J.; JAN, J.; KOLÁŘ, R. Vessel Segmentation by Matched Filtering in Colour Retinal Images. Abstracts of Contributions to 5th International Workshop on Data - Algorithms - Decision Making. Ústav teorie informace AV ČR, v.v.i. 2009. p. 48-48.
  Detail

  ODSTRČILÍK, J.; JAN, J.; KOLÁŘ, R.; GAZÁREK, J. Improvement of Vessel Segmentation by Matched Filtering in Colour Retinal Images. In IFMBE Proceedings of World Congress on Medical Physics and Biomedical Engineering. Springer. Springer, 2009. p. 327-330. ISBN: 978-3-642-03897- 6.
  Detail

• 2008

  ODSTRČILÍK, J.; JAN, J.; KOLÁŘ, R. Segmentation of Vessel Structure in Retinal Images by Matched Filtering. Analysis of Biomedical Signals and Images, 2008, vol. 2008(19), no. 1, p. 178-183. ISSN: 1211- 412X.
  Detail

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