Publication detail

Signal Based Processing of Metagenomic Data from Nanopore Sequencing

KUPKOVÁ, K.

Original Title

Signal Based Processing of Metagenomic Data from Nanopore Sequencing

Type

conference paper

Language

English

Original Abstract

The revolutionary sequencing technology introduced by Oxford Nanopore Technologies – MinION holds a great promise in the field of metagenomics due to its low cost, produced long reads and small size, which makes it available also for field work. The only problem preventing this technology from reaching its full potential is the lack of available computational tools for handling the produced data. Here we present an algorithm for processing of the raw signal sequences generated by nanopore sequencing for metagenomic purposes allowing to remove viral sequences from a contaminated metagenomic sample.

Keywords

metagenomics, WMS, Oxford Nanopore, signal processing

Authors

KUPKOVÁ, K.

Released

27. 4. 2017

Location

Brno

ISBN

978-80-214-5496-5

Book

Proceedings of the 23rd Conference STUDENT EEICT 2017

Edition number

1

Pages from

324

Pages to

328

Pages count

694

URL

http://www.utee.feec.vutbr.cz/eeict/2017/EEICT%202017-sborn%C3%ADk-komplet.pdf

BibTex

@inproceedings{BUT135330,
  author="Kristýna {Kupková}",
  title="Signal Based Processing of Metagenomic Data from Nanopore Sequencing",
  booktitle="Proceedings of the 23rd Conference STUDENT EEICT 2017",
  year="2017",
  number="1",
  pages="324--328",
  address="Brno",
  isbn="978-80-214-5496-5",
  url="http://www.utee.feec.vutbr.cz/eeict/2017/EEICT%202017-sborn%C3%ADk-komplet.pdf"
}