Detail publikace

Signal Based Processing of Metagenomic Data from Nanopore Sequencing

KUPKOVÁ, K.

Originální název

Signal Based Processing of Metagenomic Data from Nanopore Sequencing

Typ

článek ve sborníku ve WoS nebo Scopus

Jazyk

angličtina

Originální abstrakt

The revolutionary sequencing technology introduced by Oxford Nanopore Technologies – MinION holds a great promise in the field of metagenomics due to its low cost, produced long reads and small size, which makes it available also for field work. The only problem preventing this technology from reaching its full potential is the lack of available computational tools for handling the produced data. Here we present an algorithm for processing of the raw signal sequences generated by nanopore sequencing for metagenomic purposes allowing to remove viral sequences from a contaminated metagenomic sample.

Klíčová slova

metagenomics, WMS, Oxford Nanopore, signal processing

Autoři

KUPKOVÁ, K.

Vydáno

27. 4. 2017

Místo

Brno

ISBN

978-80-214-5496-5

Kniha

Proceedings of the 23rd Conference STUDENT EEICT 2017

Číslo edice

1

Strany od

324

Strany do

328

Strany počet

694

URL

http://www.utee.feec.vutbr.cz/eeict/2017/EEICT%202017-sborn%C3%ADk-komplet.pdf

BibTex

@inproceedings{BUT135330,
  author="Kristýna {Kupková}",
  title="Signal Based Processing of Metagenomic Data from Nanopore Sequencing",
  booktitle="Proceedings of the 23rd Conference STUDENT EEICT 2017",
  year="2017",
  number="1",
  pages="324--328",
  address="Brno",
  isbn="978-80-214-5496-5",
  url="http://www.utee.feec.vutbr.cz/eeict/2017/EEICT%202017-sborn%C3%ADk-komplet.pdf"
}