Detail publikace

Classification of genomic signals using dynamic time warping

ŠKUTKOVÁ, H. VÍTEK, M. BABULA, P. KIZEK, R. PROVAZNÍK, I.

Originální název

Classification of genomic signals using dynamic time warping

Typ

článek v časopise ve Web of Science, Jimp

Jazyk

angličtina

Originální abstrakt

Classification methods of DNA most commonly use comparison of the differences in DNA symbolic records, which requires the global multiple sequence alignment. This solution is often inappropriate, causing a number of imprecisions and requires additional user intervention for exact alignment of the similar segments. The similar segments in DNA represented as a signal are characterized by a similar shape of the curve. The DNA alignment in genomic signals may adjust whole sections not only individual symbols. The dynamic time warping (DTW) is suitable for this purpose and can replace the multiple alignment of symbolic sequences in applications, such as phylogenetic analysis.

Klíčová slova

phylogenetics, dynamic time warping, genomic signals

Autoři

ŠKUTKOVÁ, H.; VÍTEK, M.; BABULA, P.; KIZEK, R.; PROVAZNÍK, I.

Rok RIV

2013

Vydáno

12. 8. 2013

Nakladatel

BIOMED CENTRAL LTD

Místo

London

ISSN

1471-2105

Periodikum

BMC BIOINFORMATICS

Ročník

14

Číslo

10

Stát

Spojené království Velké Británie a Severního Irska

Strany od

1

Strany do

7

Strany počet

7

URL

http://www.biomedcentral.com/1471-2105/14/S10/S1

BibTex

@article{BUT101854,
  author="Helena {Vítková} and Martin {Vítek} and Petr {Babula} and René {Kizek} and Valentine {Provazník}",
  title="Classification of genomic signals using dynamic time warping",
  journal="BMC BIOINFORMATICS",
  year="2013",
  volume="14",
  number="10",
  pages="1--7",
  doi="10.1186/1471-2105-14-S10-S1",
  issn="1471-2105",
  url="http://www.biomedcentral.com/1471-2105/14/S10/S1"
}