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VÍTKOVÁ, H. NYKRÝNOVÁ, M. BEZDÍČEK, M. LENGEROVÁ, M.
Originální název
Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies
Typ
článek ve sborníku ve WoS nebo Scopus
Jazyk
angličtina
Originální abstrakt
Plasmids, integral to bacterial evolution, pose challenges in their genome classification due to incomplete assembly data. While next-generation sequencing has improved plasmid classification, challenges persist in accurately assembling complete plasmid genomes. This study presents a novel plasmid classification methodology based on complete genome similarity, utilizing three metrics: nucleotide composition, gene occurrence, and structural dissimilarity. Tested on a local Klebsiella pneumoniae population, the method outperforms pMLST and PlasmidFinder, distinguishing plasmids even in fusion cases. Applied across diverse bacterial populations, this reference-free approach proves adaptable, offering a valuable tool for monitoring plasmid mobility and diversity. Third-generation sequencing advancements provide a comprehensive understanding of plasmid dynamics, which is essential for addressing antibiotic resistance and bacterial pathogenicity.
Klíčová slova
bacteria; diversity; genome alignment; pangenome; phylogenetics; plasmid type
Autoři
VÍTKOVÁ, H.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.
Vydáno
28. 8. 2024
Nakladatel
Springer Nature
ISBN
978-3-031-64636-2
Kniha
Lecture Notes in Bioinformatics
Edice
14849
Číslo edice
II.
ISSN
1611-3349
Periodikum
Lecture Notes in Computer Science
Ročník
Číslo
Stát
Italská republika
Strany od
314
Strany do
328
Strany počet
15
URL
https://link.springer.com/chapter/10.1007/978-3-031-64636-2_24
BibTex
@inproceedings{BUT189778, author="Helena {Vítková} and Markéta {Jakubíčková} and Matěj {Bezdíček} and Martina {Lengerová}", title="Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies", booktitle="Lecture Notes in Bioinformatics", year="2024", series="14849", journal="Lecture Notes in Computer Science", volume="14849", number="II.", pages="314--328", publisher="Springer Nature", doi="10.1007/978-3-031-64636-2\{_}24", isbn="978-3-031-64636-2", issn="1611-3349", url="https://link.springer.com/chapter/10.1007/978-3-031-64636-2_24" }