Publications

• 2024

  VELECKÝ, J.; BEREZNÝ, M.; MUSIL, M.; MAZURENKO, S.; BEDNÁŘ, D.; DAMBORSKÝ, J. BenchStab: A tool for automated querying of web-based stability predictors. BIOINFORMATICS, 2024, vol. 2024, no. 9, p. 1-8. ISSN: 1367-4803.
  Detail | WWW

• 2023

  MUSIL, M.; JEŽÍK, A.; HORÁČKOVÁ, J.; BORKO, S.; KABOUREK, P.; DAMBORSKÝ, J.; BEDNÁŘ, D. FireProt 2.0: Web-based Platform for the Fully-Automated Design of Thermostable Proteins. BRIEFINGS IN BIOINFORMATICS, 2023, vol. 25, no. 1, p. 1-10. ISSN: 1467-5463.
  Detail | WWW

  POLJOVKA, A.; MUSIL, M.; BEDNÁŘ, D.; CHOVANOVÁ, K.; BAUEROVÁ-HLINKOVÁ, V.; BELLOVÁ, J.; KOHÚTOVÁ, L.; BARÁTH, P.; ZÁMOCKÝ, M. Comparison of Fungal Thermophilic and Mesophilic Catalase-Peroxidases for Their Antioxidative Properties. Antioxidants, 2023, vol. 12, no. 7, p. 1-19. ISSN: 2076-3921.
  Detail | WWW | Full text in the Digital Library

• 2022

  ZÁMOCKÝ, M.; MUSIL, M.; BANCHENKO, M.; FERIANC, P.; CHOVANOVÁ, K.; BARÁTH, P.; POLJOVKA, A.; BEDNÁŘ, D. Deep Insights into the Specific Evolution of Fungal Hybrid B Heme Peroxidases. Biology, 2022, vol. 11, no. 3, p. 1-18. ISSN: 2079-7737.
  Detail | WWW

  VELECKÝ, J.; HAMŠÍKOVÁ, M.; ŠTOURAČ, J.; MUSIL, M.; DAMBORSKÝ, J.; BEDNÁŘ, D.; MAZURENKO, S. SoluProtMutDB: A manually curated database of protein solubility changes upon mutations. Computational and Structural Biotechnology Journal, 2022, vol. 20, no. 1, p. 6339-6347. ISSN: 2001-0370.
  Detail | WWW

  MUSIL, M.; JEŽÍK, A.; HAMŠÍKOVÁ, M.; ŠTOURAČ, J.; GALGONEK, J.; EYRILMEZ, S.; VONDRÁŠEK, J.; DAMBORSKÝ, J.; BEDNÁŘ, D. Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web. Computational and Structural Biotechnology Journal, 2022, vol. 20, no. 1, p. 6512-6518. ISSN: 2001-0370.
  Detail | WWW

• 2021

  PLANAS-IGLESIAS, J.; PINTO, G.; MARQUES, S.; MUSIL, M.; DAMBORSKÝ, J.; ŠTOURAČ, J.; BEDNÁŘ, D. Computational design of enzymes for biotechnological applications. BIOTECHNOLOGY ADVANCES, 2021, vol. 47, no. 1, p. 1-22. ISSN: 0734-9750.
  Detail | WWW

  KHAN, R.; MUSIL, M.; ŠTOURAČ, J.; DAMBORSKÝ, J.; BEDNÁŘ, D. Fully Automated Ancestral Sequence Reconstruction using FireProtASR. Current Protocols in Bioinformatics, 2021, vol. 1, no. 2, p. 1-5. ISSN: 1934-3396.
  Detail | WWW

• 2020

  MUSIL, M.; KHAN, R.; BEIER, A.; ŠTOURAČ, J.; KONEGGER, H.; DAMBORSKÝ, J.; BEDNÁŘ, D. FireProtASR: Web Server for Fully Automated Ancestral Sequence Reconstruction. BRIEFINGS IN BIOINFORMATICS, 2020, vol. 22, no. 4, p. 1-11. ISSN: 1467-5463.
  Detail | WWW

  ŠTOURAČ, J.; DÚBRAVA, J.; MUSIL, M.; HORÁČKOVÁ, J.; MAZURENKO, S.; DAMBORSKÝ, J.; BEDNÁŘ, D. FireProtDB: Database of Manually Curated Protein Stability Data. Nucleic Acids Research, 2020, vol. 49, no. 1, p. 319-324. ISSN: 1362-4962.
  Detail | WWW

• 2019

  MUSIL, M.; KONEGGER, H.; HON, J.; BEDNÁŘ, D.; DAMBORSKÝ, J. Computational Design of Stable and Soluble Biocatalysts. ACS Catalysis, 2019, vol. 9, no. 2, p. 1033-1054. ISSN: 2155-5435.
  Detail | WWW

  MUSIL, M.; KONEGGER, H.; ŠTOURAČ, J.; BEDNÁŘ, D.; DAMBORSKÝ, J. FireProtASR: an automated woRKFLOW FOR ANCESTRAL SEQUENCE RECONSTRUCTION. ISMB/ECCB 2019. Basilej: 2019. p. 0-0.
  Detail | WWW

• 2018

  BEERENS, K.; MAZURENKO, S.; KUNKA, A.; MARQUES, S.; HANSEN, N.; MUSIL, M.; CHALOUPKOVÁ, R.; WATERMAN, J.; BREZOVSKÝ, J.; BEDNÁŘ, D.; PROKOP, Z.; DAMBORSKÝ, J. Evolutionary Analysis is a Powerful Complement to Energy Calculations Allowing Entropy-Driven Stabilization. ACS Catalysis, 2018, vol. 2018, no. 8, p. 9420-9428. ISSN: 2155-5435.
  Detail | WWW

  MUSIL, M.; MARTÍNEK, T.; ZENDULKA, J. FireProt: web server for automated design of thermostable proteins. DAZ & WIKT 2018 Proceedings. Brno: 2018. p. 1-4.
  Detail | WWW

• 2017

  MUSIL, M.; ŠTOURAČ, J.; BENDL, J.; BREZOVSKÝ, J.; PROKOP, Z.; ZENDULKA, J.; MARTÍNEK, T.; BEDNÁŘ, D.; DAMBORSKÝ, J. FireProt: web server for automated design of thermostable proteins. Nucleic Acids Research, 2017, vol. 45, no. 1, p. 393-399. ISSN: 1362-4962.
  Detail | WWW

• 2016

  BENDL, J.; MUSIL, M.; ŠTOURAČ, J.; ZENDULKA, J.; DAMBORSKÝ, J.; BREZOVSKÝ, J. PredictSNP2: A unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions. PLoS Computational Biology, 2016, vol. 12, no. 5, p. 1-18. ISSN: 1553-7358.
  Detail | WWW

  BENDL, J.; ŠTOURAČ, J.; ŠEBESTOVÁ, E.; VÁVRA, O.; MUSIL, M.; BREZOVSKÝ, J.; DAMBORSKÝ, J. HotSpot Wizard 2.0: Automated Design of Site-specific Mutations and Smart Libraries in Protein Engineering. Nucleic Acids Research, 2016, vol. 44, no. 1, p. 479-487. ISSN: 1362-4962.
  Detail | WWW

*) Publications are generated once a 24 hours.