Ing. et Ing.
Jana Schwarzerová
MSc
FEKT, UBMI – vědecký pracovník
+420 54114 6646
xschwa16@vut.cz
Publikace
2025
SCHWARZEROVÁ, J.; OLEŠOVÁ, D.; ŠABATOVÁ, K.; KVASNIČKA, A.; KOŠTOVAL, A.; FRIEDECKÝ, D.; SEKORA, J.; DLUHÁ, J.; PROVAZNÍK, V.; POPELINSKY, L.; WECKWERTH, W. Enhanced metabolomic predictions using concept drift analysis: identification and correction of confounding factors. Bioinformatics Advances, 2025, roč. 5, č. 1,
s. 1-12. ISSN: 2635-0041.
Detail | WWW | Plný text v Digitální knihovněRYŠAVÁ, M.; PALKOVIČOVÁ, J.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; JAKUBÍČKOVÁ, M.; DOLEJSKÁ, M. Plasmid-Mediated Antibiotic Resistance Dynamics in Broiler Chickens Revealed by Long-Read Sequencing. ENBIK 2025, Karlov pod Pradědem. 2025.
DetailVAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Antibiotická rezistence a struktura populace Flavobacterium psychrophilum v chovech lososovitých ryb v České republice. Veterinářství. Profi Press, s.r.o. GJ, 2025, roč. 75, č. 1,
s. 36-41. ISSN: 0506-8231.
Detail | WWWSCHWARZEROVÁ, J.; MATE, E.; IDKOWIAK, J.; OLEŠOVÁ, D.; KVASNIČKA, A.; DOBESOVA, D.; FRIEDECKÝ, D.; PROVAZNÍK, V.; SKARDA, J.; WECKWERTH, W.; NÄGELE, T. MInfer: Bridging MetaboAnalyst and Jacobian analysis for metabolomic networks. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2025, roč. 263, č. 1,
s. 1-8. ISSN: 0169-2607.
Detail | WWW | Plný text v Digitální knihovně2024
NEJEZCHLEBOVÁ, J.; RYCHLÍK, I.; SCHWARZEROVÁ, J. Bacterial Identifier: Accelerating Bacterial Genome Detection. Proceedings I of the 30th Conference STUDENT EEICT 2024. 1. 2024.
s. 97-100. ISBN: 978-80-214-6231-1.
Detail | WWWMACHELOVÁ, A.; DADEJOVÁ, M.; FRANEK, M.; MOUGEOT, G.; SIMON, L.; LE GOFF, S.; DUC, C.; BASSLER, J.; DEMKO, M.; SCHWARZEROVÁ, J.; DESSET, S.; PROBST, A.; DVOŘÁČKOVÁ, M. The histone chaperones ASF1 and HIRA are required for telomere length and 45S rDNA copy number homeostasis. PLANT JOURNAL, 2024, roč. 120, č. 3,
s. 1125-1141. ISSN: 0960-7412.
Detail | WWW | Plný text v Digitální knihovněVAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; NEJEZCHLEBOVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Genetic and phenotypic diversity of Flavobacterium psychrophilum isolates from Czech salmonid fish farms. BMC MICROBIOLOGY, 2024, roč. 24, č. 1,
s. 1-15. ISSN: 1471-2180.
Detail | WWW | Plný text v Digitální knihovněSCHWARZEROVÁ, J.; RAJASEKARAN, L.; JUREČKOVÁ, K.; NEJEZCHLEBOVÁ, J.; VARGA, M.; PROVAZNÍK, V.; WECKWERTH, W.; ČEJKOVÁ, D. Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024.
s. 267-277. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.
Detail | WWWSCHWARZEROVÁ, J.; HURTA, M.; BARTOŇ, V.; LEXA, M.; WALTHER, D.; PROVAZNÍK, V.; WECKWERTH, W. A perspective on genetic and polygenic risk scores-advances and limitations and overview of associated tools. Briefings in Bioinformatics, 2024, roč. 25, č. 3,
s. 1-11. ISSN: 1477-4054.
Detail | WWW | Plný text v Digitální knihovněSCHWARZEROVÁ, J.; PIHEROVA, L.; POLAKOVIČOVÁ, P.; GUZIUROVA, S.; KUTILKOVA, E.; ADAMOVA, M.; KREBSOVA, A.; PROVAZNÍK, V.; WECKWERTH, W.; SITKOVA, R. Polygenic Risk Score Simulation: A case study of sudden cardiovascular diseases derived from literature insights. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2024.
s. 5080-5087. ISBN: 979-8-3503-8622-6.
Detail | WWWSCHWARZEROVÁ, J.; NOHEL, M.; SITKOVA, R.; SKARDA, J.; CHMELÍK, J.; PROVAZNÍK, V.; WECKWERTH, W. Unlocking Genetic Prognostication: Cage App – Computer-Aided Approach for Genomics Prediction. Kladno, Czech Republik: 2024.
Detail | WWWVARGA, M.; JOLLEY, K.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; MAIDEN, M. Using visual analytics to make sense of genomics data. Oxford UK: Oxford hub, 2024.
Detail | WWWSCHWARZEROVÁ, J.; VARGA, M.; NEJEZCHLEBOVÁ, J.; WECKWERTH, W.; RYCHLÍK, I.; ČEJKOVÁ, D. Exploring Mobile Genetic Elements: A Novel In-Silico Approach to Analyzing the Microbiome. Germany: 2024.
Detail | WWWPARTOVI NASR, M.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; ŠABATOVÁ, K.; JAKUBÍČKOVÁ, M. Detection of antimicrobial resistance genes in chicken feces from metagenomic samples: a comparative study on bioinformatics tools. 2024.
DetailJANIGOVÁ, P.; WECKWERTH, W.; SCHWARZEROVÁ, J. Py/ExplorReg: Exploration of Transcriptome for Potential Regulon Structure Detection. Proceedings I of the 30th Conference STUDENT EEICT 2024. 1. 2024.
s. 28-31. ISBN: 978-80-214-6231-1.
Detail | WWWSCHWARZEROVÁ, J.; JANIGOVÁ, P.; DVOŘÁČKOVÁ, M.; WECKWERTH, W. Optimizing of pre-processing analysis for Illumina RNA-Seq data in Arabidopsis thaliana. In Proceedings II of the 30st Conference STUDENT EEICT 2024: Selected papers. Proceedings II of the Conference STUDENT EEICT. 1. 2024.
s. 142-146. ISBN: 978-80-214-6230-4. ISSN: 2788-1334.
Detail2023
SCHWARZEROVÁ, J.; HURTA, M.; WECKWERTH, W.; WALTHER, D. Decoding the Hidden Secrets of SNP Data: Revealing Ancestral Origins, Genomic Predictions, and Polygenic Risk Score. Germany: 2023.
DetailNEJEZCHLEBOVÁ, J.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D. An insight into horizontal gene transfer in Bacteroidetes spp. using in-silico analysisof operon structures. Proceedings I of the 29th Conference STUDENT EEICT 2023 General papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2023.
s. 210-213. ISBN: 978-80-214-6153-6.
Detail | WWWSCHWARZEROVÁ, J.; OLEŠOVÁ, D.; KVASNIČKA, A.; FRIEDECKÝ, D.; VARGA, M.; PROVAZNÍK, V.; WECKWERTH, W. Systematic comparison of advanced network analysis and visualization of lipidomics data. In Bioinformatics and Biomedical Engineering. 1. SPRINGER INTERNATIONAL PUBLISHING AG, 2023.
s. 378-389. ISBN: 978-3-031-34953-9.
Detail | WWWSCHWARZEROVÁ, J.; RETZER, K.; WECKWERTH, W. In-silico modelling of signalling pathways for dual functional of SnRK1 and SnRK2. Auxins and Cytokinins in Plant Development 2023 ... and cross-talk with other phytohormones in interactions with the changing environment. 2023.
s. 116-116.
DetailSCHWARZEROVÁ, J.; WECKWERTH, W. A Comprehensive Tool for State-of-the-Art Pre-processing Analysis in Metabolomics included in updated App: COVAIN v2.0.0. Book of Abstracts from the Eleventh Annual Conference of the Czech Society for Mass Spectrometry. first. Czech Society for Mass Spectrometry, 2023.
s. 38-38. ISBN: 978-80-907478-2-1.
DetailSCHWARZEROVÁ, J.; BARTOŇ, V.; WALTHER, D.; WECKWERTH, W. Comprehensive analysis of putrescine metabolism in A. thaliana using GWAS, genetic risk score, metabolic modelling and data mining. In Proceedings II of the 29th Conference STUDENT EEICT 2023 Selected Papers. 1. Brno: Brno University of Technology, Faculty of Elektronic Engineering and Communication, 2023.
s. 151-155. ISBN: 978-80-214-6154-3.
Detail | WWWHURTA, M.; SCHWARZEROVÁ, J.; NAGELE, T.; WECKWERTH, W.; PROVAZNÍK, V.; SEKANINA, L. Utilizing Genetic Programming to Enhance Polygenic Risk Score Calculation. In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2023). Istanbul: Institute of Electrical and Electronics Engineers, 2023.
s. 3782-3787. ISBN: 979-8-3503-3748-8.
Detail | WWWWEISZMANN, J.; WALTHER, D.; CLAUW, P.; BACK, G.; GUNIS, J.; REICHARDT, I.; KOEMEDA, S.; JEZ, J.; NORDBORG, M.; PIERDIES, I.; SCHWARZEROVÁ, J.; NÄGELE, T.; WECKWERTH, W. Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. PLANT PHYSIOLOGY, 2023, roč. 192, č. 2,
s. 980-1000. ISSN: 0032-0889.
Detail | WWW | Plný text v Digitální knihovněHURTA, M.; SCHWARZEROVÁ, J.; PROVAZNÍK, V.; WECKWERTH, W.; WALTHER, D.; SEKANINA, L. Utilizing Cartesian Genetic Programming for Efficient Polygenic Risk Score Calculation in Plants. Program and Abstract Book: Swedish Bioinformatics Workshop 2023. Stockholm: 2023.
s. 49-49.
Detail | WWWSCHWARZEROVÁ, J.; ZEMAN, M.; BABÁK, V.; JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; VARGA, M.; WECKWERTH, W.; DOLEJSKÁ, M.; PROVAZNÍK, V.; RYCHLÍK, I.; ČEJKOVÁ, D. Detecting horizontal gene transfer among microbiota: an innovative pipeline for identifying co-shared genes within the mobilome through advanced comparative analysis. Microbiology spectrum, 2023, roč. 12, č. 1, ISSN: 2165-0497.
Detail | WWW | Plný text v Digitální knihovněSCHWARZEROVÁ, J.; LABANAVA, A.; RYCHLÍK, I.; VARGA, M.; ČEJKOVÁ, D. A minireview on the bioinformatics analysis of mobile gene elements in microbiome research. Frontiers in Bacteriology, 2023, roč. 2, č. 1, ISSN: 2813-6144.
Detail | WWW | Plný text v Digitální knihovně2022
NEMČEKOVÁ, P.; SCHWARZEROVÁ, J. Dynamic metabolomic prediction based on genetic variation for Hordeum vulgare. In Proceedings I of the 28th Conference STUDENT EEICT 2022 General Papers. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022.
s. 251-254. ISBN: 978-80-214-6029-4.
Detail | WWWSCHWARZEROVÁ, J.; ČEJKOVÁ, D. Identification of horizontal genes transfer elements across strains inhabiting the same niche using pan-genome analysis. In Proceedings I of the 28th Conference STUDENT EEICT 2022 General Papers. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022.
s. 416-420. ISBN: 978-80-214-6029-4.
Detail | WWWNEJEZCHLEBOVÁ, J.; SCHWARZEROVÁ, J. Operon identifier: Identification of operon structures in the whole genome. In Proceedings II of the 28th Conference STUDENT EEICT 2022 Selected Papers. Brno: Brno University of Technology, Faculty of electrical engineering and communication, 2022.
s. 80-83. ISBN: 978-80-214-6030-0.
Detail | WWWSCHWARZEROVÁ, J.; WECKWERTH, W.; WALTHER, D. Insight in single nucleotide polymorphisms focused on post transcriptional modifications in Arabidopsis thaliana. NGSymposium in Computational Biology. Warsaw: NGSymposium, 2022.
s. 12-12.
Detail | WWWSCHWARZEROVÁ, J.; KOŠTOVAL, A.; BAJGER, A.; JAKUBIKOVA, L.; PIERDIES, I.; POPELINSKY, L.; SEDLÁŘ, K.; WECKWERTH, W. A Revealed Imperfection in Concept Drift Correction in Metabolomics Modeling. In Information Technology in Biomedicine. Springer, 2022.
s. 498-509. ISBN: 978-3-031-09135-3.
DetailSIDAK, D.; SCHWARZEROVÁ, J.; WECKWERTH, W.; WALDHERR, S. Interpretable machine learning methods for predictions in systems biology from omics data. Frontiers in Molecular Biosciences, 2022, roč. 9, č. October 2022,
s. 1-28. ISSN: 2296-889X.
Detail | WWW | Plný text v Digitální knihovněSCHWARZEROVÁ, J.; ZEMAN, M.; RYCHLÍK, I.; WECKWERTH, W.; PROVAZNÍK, I.; DOLEJSKÁ, M.; ČEJKOVÁ, D. Systems biology approach for analysis of mobile genetic elements in chicken gut microbiome. In 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE Computer Society, 2022.
s. 2865-2870. ISBN: 978-1-4577-1799-4.
Detail | WWWSCHWARZEROVÁ, J.; ZEMAN, M.; WECKWERTH, W.; PROVAZNÍK, I.; RYCHLÍK, I.; ČEJKOVÁ, D. Comprehensive analysis of mobile genetic elements in chicken gut microbiome using a novel in-silico approach. 14th Host Pathogen Interaction Forum 2022. Hradec Kralove: 2022. ISBN: 978-80-906723-2-1.
DetailSCHWARZEROVÁ, J.; NEMČEKOVÁ, P.; PIERDIES, I.; NOHEL, M.; CHMELÍK, J.; SEDLÁŘ, K.; WECKWERTH, W. OMICs prediction for Hordeum vulgare using Random Forest methodology. The Biomania Student Scientific Meeting 2022, Book of abstract. 1st. Brno: Masaryk University Press, 2022.
s. 52-52. ISBN: 978-80-280-0040-0.
DetailKOŠTOVAL, A.; SCHWARZEROVÁ, J. Concept Drift Detection in Prediction Classifiers for Determining Gender in Metabolomics Analysis. In Proceedings I of the 28th Conference STUDENT EEICT 2022 General Papers. 1. Brno: Brno University of Technology, Faculty of Electronic Engineering and Communication, 2022.
s. 128-131. ISBN: 978-80-214-6029-4.
Detail | WWWPOMYKALOVÁ, B.; POLZEROVÁ, N.; NEJEZCHLEBOVÁ, J.; SCHWARZEROVÁ, J.; JUREČKOVÁ, K.; SEDLÁŘ, K. Advanced annotation related to gene regulation in Clostridium beijerinckii NRRL B-598. The Biomania Student Scientific Meeting 2022 - Book of Abstracts. Brno: Masaryk University Press, 2022.
s. 136-136. ISBN: 978-80-280-0040-0.
DetailSCHWARZEROVÁ, J.; PIERDIES, I.; SEDLÁŘ, K.; WECKWERTH, W. Linear Predictive Modeling for Immune Metabolites Related to Other Metabolites. In Bioinformatics and Biomedical Engineering. Springer, 2022.
s. 16-27. ISBN: 978-3-031-07704-3.
Detail | WWWČEJKOVÁ, D.; STREĎANSKÁ, K.; JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; SCHWARZEROVÁ, J.; DOLEJSKÁ, M. Horizontal gene transfer network in chicken gut microbiome. 14th Host Pathogen Interaction Forum 2022. Hradec Kralove: 2022. ISBN: 978-80-906723-2-1.
Detail2021
SCHWARZEROVÁ, J. OPERON-EXPRESSER: The Innovated Gene Expression-based Algorithm for Operon Structures Inference. Proceedings of the 27th Conference STUDENT EEICT 2021. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2021.
s. 301-306. ISBN: 978-80-214-5942-7.
Detail | WWWSCHWARZEROVÁ, J. Metabolite Genome-wide Association Studies of Arabidopsis Thaliana. In Proceedings of the 27th Conference STUDENT EEICT 2021 selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2021.
s. 41-44. ISBN: 978-80-214-5943-4.
Detail | WWWSCHWARZEROVÁ, J.; MUSILOVÁ, J.; JUREČKOVÁ, K.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Operon Structure Inference in Clostridium beijerinckii NRRL B-589 using RNA-Seq. In 8th International Conference on Chemical Technology. 2021.
s. 284-289. ISBN: 978-80-88307-08-2.
DetailSCHWARZEROVÁ, J.; BAJGER, A.; PIERDOU, I.; POPELINSKY, L.; SEDLÁŘ, K.; WECKWERTH, W. An Innovative Perspective on Metabolomics Data Analysis in Biomedical Research Using Concept Drift Detection. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Institute of Electrical and Electronics Engineers Inc., 2021.
s. 3075-3082. ISBN: 978-1-6654-0126-5.
Detail | WWWKOUŘILOVÁ, X.; SCHWARZEROVÁ, J.; PERNICOVÁ, I.; SEDLÁŘ, K.; MRÁZOVÁ, K.; KRZYŽÁNEK, V.; NEBESÁŘOVÁ, J.; OBRUČA, S. The First Insight into Polyhydroxyalkanoates Accumulation in Multi-Extremophilic Rubrobacter xylanophilus and Rubrobacter spartanus. Microorganisms, 2021, roč. 9, č. 5,
s. 1-13. ISSN: 2076-2607.
Detail | WWW | Plný text v Digitální knihovně2020
SCHWARZEROVÁ, J. Reproducible analytical pipeline for using raw RNA-Seq data from non-model organisms. Proceedings of the 26th Conference STUDENT EEICT 2020. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2020.
s. 225-228. ISBN: 978-80-214-5867-3.
Detail | WWW
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