Publications

• 2024

  NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; VÍTKOVÁ, H. Design of a plasmid classification workflow for local bacterial population analysis. ESCMID Global 2024, Barcelona, Spain. 2024.
  Detail

  NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; VÍTKOVÁ, H. Exploring DNA Methylation Patterns in the Core Genome of Klebsiella pneumoniae. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. p. 140-152. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.
  Detail | WWW

  VÍTKOVÁ, H.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M. Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. p. 314-328. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.
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  JUGAS, R.; VÍTKOVÁ, H. ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing. BMC BIOINFORMATICS, 2024, vol. 25, no. 1, p. 1-13. ISSN: 1471-2105.
  Detail | WWW | Full text in the Digital Library

• 2023

  NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Bacterial phenotype prediction based on methylation site profiles. In 2023 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). IEEE, 2023. p. 1-6. ISBN: 979-8-3503-1017-7.
  Detail | WWW

  NYKRÝNOVÁ, M.; BEZDÍČEK, M.; DUFKOVÁ, K.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Hybrid mapping for plasmid content determination in NGS data. 33rd European Congress of Clinical Microbiology & Infectious Diseases 2023, Copenhagen, Denmark. 2023.
  Detail

• 2022

  NYKRÝNOVÁ, M.; JAKUBÍČEK, R.; BEZDÍČEK, M.; DUFKOVÁ, K.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Real-time MLST genes detection in nanopore squiggles. 32nd European Congress of Clinical Microbiology & Infectious Diseases 2022, Lisbon, Portugal. 2022.
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  NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; ŠKUTKOVÁ, H.; SLANINOVÁ, E.; OBRUČA, S.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Gene expression profiling in Rhodospirillum rubrum. 18th International Symposium on Biopolymers (ISBP). 2022.
  Detail

  BARTOŇ, V.; ŠKUTKOVÁ, H. Data Transformation for Clustering Utilization for Feature Detection in Mass Spectrometry. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 13347. Springer, 2022. p. 288-299. ISBN: 978-3-031-07801-9.
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  SEDLÁŘ, K.; MUSILOVÁ, J.; ŠKUTKOVÁ, H.; NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; PERNICOVÁ, I.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; ZINN, M.; OBRUČA, S. Improving structural annotation of Rhodospirillum rubrum DSM 467 with RNA-Seq. 18th International Symposium on Biopolymers (ISBP). 2022.
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  NYKRÝNOVÁ, M.; JAKUBÍČEK, R.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Using deep learning for gene detection and classification in raw nanopore signals. Frontiers in Microbiology, 2022, vol. 13, no. 1, p. 1-11. ISSN: 1664-302X.
  Detail | WWW | Full text in the Digital Library

  NYKRÝNOVÁ, M.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping. BMC GENOMICS, 2022, vol. 23, no. SUPPL 3, p. 1-12. ISSN: 1471-2164.
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  JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; SLANINOVÁ, E.; BEZDÍČEK, M.; OBRUČA, S.; ŠKUTKOVÁ, H.; SEDLÁŘ, K. Genomic and functional analysis of polyhydroxyalkanoates producer Rhodospirillum rubrum DSM 467. In Proceedings of the 9th International Conference on Chemical Technology. Prague: Czech Society of Industrial Chemistry, 2022. p. 367-372. ISBN: 978-80-88307-11-2.
  Detail | WWW

• 2021

  NYKRÝNOVÁ, M.; BARTOŇ, V.; SEDLÁŘ, K.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Word entropy-based approach to detect highly variable genetic markers for bacterial genotyping. Frontiers in Microbiology, 2021, vol. 12, no. 1, p. 1-8. ISSN: 1664-302X.
  Detail | WWW | Full text in the Digital Library

  NYKRÝNOVÁ, M.; BEZDÍČEK, M.; STRNADOVÁ, M.; DUFKOVÁ, K.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Bacterial typing via raw nanopore signals. ECCMID 2021. Vienna, Austria: 2021.
  Detail

  JUGAS, R.; SEDLÁŘ, K.; VÍTEK, M.; NYKRÝNOVÁ, M.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. CNproScan: Hybrid CNV detection for bacterial genomes. GENOMICS, 2021, vol. 113, no. 5, p. 3103-3111. ISSN: 0888-7543.
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  BEZDÍČEK, M.; NYKRÝNOVÁ, M.; SEDLÁŘ, K.; KRÁLOVÁ, S.; HANSLIKOVA, J.; KOMPRDOVÁ, A.; ŠKUTKOVÁ, H.; KOCMANOVÁ, I.; MAYER, J.; LENGEROVÁ, M. Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms. Scientific Reports, 2021, vol. 11, no. 1, p. 1-11. ISSN: 2045-2322.
  Detail | WWW | Full text in the Digital Library

  NYKRÝNOVÁ, M.; BARTOŇ, V.; VÍTEK, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Raw nanopore squiggle alignment for bacterial typing distinction enhancement. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2021. p. 1969-1974. ISBN: 978-1-6654-0126-5.
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  BARTOŇ, V.; NYKRÝNOVÁ, M.; ŠKUTKOVÁ, H. MANASIG: Python Package to MAnipulateNAnopore SIGnals from sequencing files. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2021. p. 1941-1947. ISBN: 978-1-6654-0126-5.
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  SEDLÁŘ, K.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; BRANSKÁ, B.; LENGEROVÁ, M.; PATÁKOVÁ, P.; ŠKUTKOVÁ, H. Diversity and Evolution of Clostridium beijerinckii and Complete Genome of the Type Strain DSM 791T. Processes, 2021, vol. 9, no. 7, p. 1-16. ISSN: 2227-9717.
  Detail | WWW | Full text in the Digital Library

  MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; ŠKUTKOVÁ, H.; SEDLÁŘ, K. First Complete Genome of the Thermophilic Polyhydroxyalkanoates Producing Bacterium Schlegelella thermodepolymerans DSM 15344. GENOME BIOL EVOL, 2021, vol. 13, no. 4, p. 1-13. ISSN: 1759-6653.
  Detail | WWW | Full text in the Digital Library

• 2020

  NYKRÝNOVÁ, M.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes. In Bioinformatics and Biomedical Engineering. Lecture Notes in Computer Science. 2020. p. 569-578. ISBN: 978-3-030-45384-8. ISSN: 0302-9743.
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  BARTOŇ, V.; NYKRÝNOVÁ, M.; ŠKUTKOVÁ, H. Watershed Segmentation for Peak Picking in Mass Spectrometry Data. In Bioinformatics and Biomedical Engineering. Lecture Notes in Computer Science. 2020. p. 494-502. ISBN: 978-3-030-45384-8. ISSN: 0302-9743.
  Detail

• 2019

  JUGAS, R.; VÍTEK, M.; MADĚRÁNKOVÁ, D.; ŠKUTKOVÁ, H. Signal processing based CNV detection in bacterial genomes. In Bioinformatics and Biomedical Engineering. IWBBIO 2019. Lecture Notes in Computer Science. Granada, Spain: Springer Verlag, 2019. p. 93-102. ISBN: 978-3-030-17937-3. ISSN: 0302-9743.
  Detail | WWW

  MADĚRÁNKOVÁ, D.; JUGAS, R.; SEDLÁŘ, K.; VÍTEK, M.; ŠKUTKOVÁ, H. Rapid bacterial species delineation based on parameters derived from genome numerical representations. Computational and Structural Biotechnology Journal, 2019, vol. 17, no. 1, p. 118-126. ISSN: 2001-0370.
  Detail | WWW

  NYKRÝNOVÁ, M.; MADĚRÁNKOVÁ, D.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Entropy-Based Detection of Genetic Markers for Bacteria Genotyping. In Bioinformatics and Biomedical Engineering. IWBBIO 2019. Lecture Notes in Computer Science. 2019. p. 177-188. ISBN: 978-3-030-17934-2. ISSN: 0302-9743.
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  BARTOŇ, V.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Clustering of Klebsiella Strains Based on Variability in Sequencing Data. In Bioinformatics and Biomedical Engineering. IWBBIO 2019. Lecture Notes in Computer Science. 2019. p. 189-199. ISBN: 978-3-030-17934-2. ISSN: 0302-9743.
  Detail

  JUGAS, R.; SEDLÁŘ, K.; VÍTEK, M.; ŠKUTKOVÁ, H. CNV Hybrid Detection in Bacteria Using Signal Processing. International Conference of the Genetics Society of Korea 2019 : New Horizons of Genetics. 1. Seoul, Republic of Korea: The Genetics Society of Korea, 2019. p. 101-101.
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  ŠKUTKOVÁ, H.; VÍTEK, M.; BEZDÍČEK, M.; BRHELOVÁ, E.; LENGEROVÁ, M. Advanced DNA fingerprint genotyping based on a model developed from real chip electrophoresis data. Journal of Advanced Research, 2019, vol. 18, no. 18, p. 9-18. ISSN: 2090-1232.
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  NYKRÝNOVÁ, M.; MADĚRÁNKOVÁ, D.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Bioinformatic Tools for Genotyping of Klebsiella pneumoniae Isolates. In Information Technology in Biomedicine. 2019. p. 419-428. ISBN: 978-3-319-91210-3.
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  ŠKUTKOVÁ, H.; MADĚRÁNKOVÁ, D.; SEDLÁŘ, K.; JUGAS, R.; VÍTEK, M. A degeneration-reducing criterion for optimal digital mapping of genetic codes. Computational and Structural Biotechnology Journal, 2019, vol. 17, no. 1, p. 406-414. ISSN: 2001-0370.
  Detail | WWW

  BARTOŇ, V.; ŠKUTKOVÁ, H. Watershed Segmentation for Peak Picking of High-Resolution Mass Spectrometry Data. In Proceedings of IEEE Student Branch Conference Mikulov2019. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2019. p. 23-25. ISBN: 978-80-214-5781-2.
  Detail

  NYKRÝNOVÁ, M.; ŠKUTKOVÁ, H. Method for improving the consensus sequence from NGS data based on reads classification. In Proceedings of IEEE Student Branch Conference Mikulov 2019. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2019. p. 6-9. ISBN: 978-80-214-5781-2.
  Detail | WWW

• 2018

  JUGAS, R.; VÍTEK, M.; SEDLÁŘ, K.; ŠKUTKOVÁ, H. Cross-Correlation Based Detection of Contigs Overlaps. In MIPRO 2018 proceedings. New York: IEEE, 2018. p. 155-158. ISBN: 978-953-233-095-3.
  Detail | WWW

• 2017

  MADĚRÁNKOVÁ, D.; SEDLÁŘ, K.; VÍTEK, M.; ŠKUTKOVÁ, H. The identification of replication origin in bacterial genomes by cumulated phase signal. In 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). IEEE, 2017. p. 267-271. ISBN: 978-1-4673-8988-4.
  Detail | WWW

  JUGAS, R.; SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍTEK, M. Overlap detection for a genome assembly based on genomic signal processing. In 2017 IEEE 30th International Symposium on Computer-Based Medical Systems. Proceedings of the ... IEEE International Symposium on Computer-Based Medical Systems. USA: IEEE Computer Society, 2017. p. 301-305. ISBN: 978-1-5386-1710-6. ISSN: 2372-9198.
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• 2016

  SEDLÁŘ, K.; VÍDEŇSKÁ, P.; ŠKUTKOVÁ, H.; RYCHLÍK, I.; PROVAZNÍK, I. Bipartite Graphs for Visualization Analysis of Microbiome Data. EVOLUTIONARY BIOINFORMATICS, 2016, vol. 12, no. S1, p. 17-23. ISSN: 1176-9343.
  Detail | WWW | Full text in the Digital Library

• 2015

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Bacterial Genome Assembly in Biotechnology: Clostridium Pasteurianum NRRL B- 598 Genome. 3. mezinárodní chemicko- technologická konference, SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. Mikulov: Academic and Medical Conference Agency, 2015. p. 1 (1 s.). ISBN: 978-80-86238-73- 9.
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  ŠKUTKOVÁ, H.; VÍTEK, M.; SEDLÁŘ, K.; PROVAZNÍK, I. Progressive alignment of genomic signals by multiple dynamic time warping. Journal of Theoretical Biology, 2015, vol. 2015, no. 385, p. 20-30. ISSN: 0022-5193.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍDEŇSKÁ, P.; RYCHLÍK, I.; PROVAZNÍK, I. Bipartite Graphs for Metagenomic Data Analysis and Visualization. In Proceedings 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015). 1. Washington D.C.: IEEE, 2015. p. 1123-1128. ISBN: 978-1-4673-6798-1.
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  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍTEK, M.; PROVAZNÍK, I. Set of rules for genomic signal downsampling. COMPUTERS IN BIOLOGY AND MEDICINE, 2015, vol. 64, no. p1, p. 1-7. ISSN: 0010-4825.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; KOLEK, J.; ŠKUTKOVÁ, H.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P. Complete genome sequence of Clostridium pasteurianum NRRL B-598, a non-type strain producing butanol. Journal of Biotechnology, 2015, vol. 214, no. 1, p. 113-114. ISSN: 0168-1656.
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• 2014

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Bioinformatics for biotechnology research: data mining of Clostridium pasteurianum genome. BioTech 2014 and 6th Czech- Swiss Symposium with Exhibition Book of Abstracts. 1. Praha: Institute of Chemical Technology Prague, 2014. p. 64-64. ISBN: 978-80-7080-887- 0.
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  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Identification and Characterization of Sol Operon in Clostridium Pasteurianum NRRL B- 598 Genome. In 2. mezinárodní chemicko-technologická konference, SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. 1. Mikulov: 2014. p. 1-5. ISBN: 978-80-86238-61- 6.
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  KOLEK, J.; SEDLÁŘ, K.; BRANSKÁ, B.; ŠKUTKOVÁ, H.; LINHOVÁ, M.; PROVAZNÍK, I.; MELZOCH, K.; PATÁKOVÁ, P. Clostridium pasteurianum NRRL B-598 Phenotype Matching Genotype?. Clostridium XIII book of abstracts. Shangai, China: 2014. p. 69-69.
  Detail | WWW

  SOCHOR, J.; JUŘÍKOVÁ, T.; POHANKA, M.; ŠKUTKOVÁ, H.; BAROŇ, M.; TOMÁŠKOVÁ, L.; BALLA, Š.; KLEJDUS, B.; POKLUDA, R.; MLČEK, J.; TROJÁKOVÁ, Z.; ŠALOUN, J. Evaluation of Antioxidant Activity, Polyphenolic Compounds, Amino Acids and Mineral Elements of Representative Genotypes of Lonicera edulis. MOLECULES, 2014, vol. 19, no. 5, p. 6505-6523. ISSN: 1420-3049.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍTEK, M.; PROVAZNÍK, I. Prokaryotic DNA Signal Downsampling for Fast Whole Genome Comparison. Advances in Intelligent Systems and Computing, 2014, vol. 283, no. 6, p. 373-383. ISSN: 2194-5357.
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  ŠKUTKOVÁ, H.; BABULA, P.; PROVAZNÍK, I. Bioinformatic study of genetic variability of superoxide dismutase isoforms. In 2. mezinárodní chemicko-technologická konference, SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. Mikulov: 2014. p. 1-6. ISBN: 978-80-86238-61- 6.
  Detail

• 2013

  ŠKUTKOVÁ, H.; VÍTEK, M.; KŘÍŽKOVÁ, S.; KIZEK, R.; PROVAZNÍK, I. Preprocessing and Classification of Electrophoresis Gel Images Using Dynamic Time Warping. INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2013, vol. 2013(8), no. 2, p. 1609-1620. ISSN: 1452- 3981.
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  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; PROVAZNÍK, I. Compressed DNA signal representation for classification of long sequences. In XIII pracovní setkání fyzikálních chemiků a elektrochemiků. 1. Brno: LITERA BRNO, 2013. p. 135-136. ISBN: 978-80-7375-757- 1.
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  ŠKUTKOVÁ, H.; VÍTEK, M.; BABULA, P.; KIZEK, R.; PROVAZNÍK, I. Classification of genomic signals using dynamic time warping. BMC BIOINFORMATICS, 2013, vol. 14, no. 10, p. 1-7. ISSN: 1471- 2105.
  Detail | WWW

  ŠKUTKOVÁ, H.; VÍTEK, M.; PROVAZNÍK, I. Celogenomové srovnání organismů pomocí signálového zpracování. In Trendy v biomedicínskom inžinierstve 2013. 2013. p. 1-5. ISBN: 978-80-8086-208- 4.
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  ZÍTKA, O.; KOMÍNKOVÁ, M.; SKALIČKOVÁ, S.; ŠKUTKOVÁ, H.; PROVAZNÍK, I.; ECKSCHLAGER, T.; STIBOROVÁ, M.; TRNKOVÁ, L.; ADAM, V.; KIZEK, R. Single Amino Acid Change in Metallothionein Metal-Binding Cluster Influences Interaction with Cisplatin. INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2013, vol. 8, no. 2, p. 2625-2634. ISSN: 1452-3981.
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• 2012

  SOCHOR, J.; SALAŠ, P.; ŠKUTKOVÁ, H.; BABULA, P.; PROVAZNÍK, I.; ADAM, V.; KIZEK, R. Environmental monitoring of soil conditioner effects on photosynthetic parameters of Acer campestre L. AFRICAN JOURNAL OF BIOTECHNOLOGY, 2012, vol. 11, no. 58, p. 4007-4021. ISSN: 1684- 5315.
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  ŠKUTKOVÁ, H.; BABULA, P.; STIBOROVÁ, M.; ECKSCHLAGER, T.; TRNKOVÁ, L.; PROVAZNÍK, I.; HUBÁLEK, J.; KIZEK, R.; ADAM, V. Structure, Polymorphisms and Electrochemistry of Mammalian Metallothioneins – A Review. INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2012, vol. 2012, no. 7, p. 12415-12431. ISSN: 1452- 3981.
  Detail

  ZÍTKA, O.; KOMÍNKOVÁ, M.; SKALIČKOVÁ, S.; ŠKUTKOVÁ, H.; PROVAZNÍK, I.; ECKSCHLAGER, T.; STIBOROVÁ, M.; ADAM, V.; TRNKOVÁ, L.; KIZEK, R. Hydrodynamic Voltammograms Profiling of Metallothionein Fragment. INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2012, vol. 7, no. 11, p. 10544-10561. ISSN: 1452- 3981.
  Detail

  PROVAZNÍK, I.; KUBICOVÁ, V.; ŠKUTKOVÁ, H.; NEDVĚD, J.; TKACZ, E.; BABULA, P.; KIZEK, R. Detection of Short Exons in DNA Sequences Using Complex Wavelet Transform of Structural Features. In Proceedings of IEEE International Workshop on Genomic Signal Processing and Statistics 2012. 2012. p. 1-4. ISBN: 978-1-4673-0491- 7.
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  SEDLÁŘ, K.; ŠKUTKOVÁ, H. Predikce sekundární struktury proteinů pomocí neuronové sítě. In Sborní z konference: Student EEICT 2012. Brno: VUT Brno, 2012. p. 1-3. ISBN: 978-80-214-4462- 1.
  Detail

  ŠKUTKOVÁ, H.; VÍTEK, M.; KIZEK, R.; PROVAZNÍK, I. Preprocessing and classification of electroforetic gel image using dynamic time warping. In Sborník - XII. Pracovní setkání fyzikálních chemiků a elektrochemiků. Brno: Mendelova univerzita v Brně, 2012. p. 280-282. ISBN: 978-80-7375-618- 5.
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  ŠMERKOVÁ, K.; DOSTÁLOVÁ, S.; ŠKUTKOVÁ, H.; VACULOVIČOVÁ, M.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. Isolation of Xis Gen Fragment of lambda Phage from Agarose Gel Using Magnetic Particles for Subsequent Enzymatic DNA Sequencing. CHROMATOGRAPHIA, 2012, vol. 2012, no. 10, p. 1-6. ISSN: 0009-5893.
  Detail

  BABULA, P.; MASAŘÍK, M.; ADAM, V.; ECKSCHLAGER, T.; STIBOROVÁ, M.; TRNKOVÁ, L.; ŠKUTKOVÁ, H.; PROVAZNÍK, I.; HUBÁLEK, J.; KIZEK, R. Mammalian metallothioneins: properties and functions. METALLOMICS, 2012, vol. 4, no. 1, p. 739-750. ISSN: 1756-5901.
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  VACULOVIČOVÁ, M.; HYNEK, D.; ŠKUTKOVÁ, H.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. Structural changes in metallothionein isoforms revealed by capillary electrophoresis and Brdicka reaction. Electrophoresis, 2012, vol. 33, no. 2, p. 270-279. ISSN: 0173-0835.
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  BABULA, P.; VODIČKA, O.; ADAM, V.; KUMMEROVÁ, M.; HAVEL, L.; HOŠEK, J.; PROVAZNÍK, I.; ŠKUTKOVÁ, H.; BEKLOVÁ, M.; KIZEK, R. Effect of fluoranthene on plant cell model: Tobacco BY- 2 suspension culture. ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2012, vol. 2012, no. 78, p. 117-126. ISSN: 0098- 8472.
  Detail

• 2011

  SOCHOR, J.; ŠKUTKOVÁ, H.; BABULA, P.; ZÍTKA, O.; CERNEI, N.; ROP, O.; KRŠKA, B.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. Mathematical evaluation of the amino acid and polyphenol content and antioxidant activities of fruits from different apricot cultivars. MOLECULES, 2011, vol. 16, no. 9, p. 7428-7457. ISSN: 1420-3049.
  Detail | WWW | Full text in the Digital Library

  ŠKUTKOVÁ, H.; MADĚRÁNKOVÁ, D.; PROVAZNÍK, I. Výuka molekulární fylogenetiky v bioinformatických předmětech. In Sborník konference Trendy v Biomedicínském inženýrství 2011. VŠB - Technická univerzita Ostrava, 2011. p. 52-55. ISBN: 978-80-248-2475- 8.
  Detail

  TRNKOVÁ, L.; HÚSKA, D.; ŠKUTKOVÁ, H.; BEKLOVÁ, M.; HUBÁLEK, J.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. Paramagnetic antibody- modified microparticles coupled with voltammetry as a tool for isolation and detection of metallothionen as a bioindicator of metal pollution. JOURNAL OF ENVIRONMENTAL MONITORING, 2011, vol. 2011, no. 13, p. 2763-2769. ISSN: 1464- 0325.
  Detail

  ŠKUTKOVÁ, H.; PROVAZNÍK, I.; KIZEK, R. Influence of sample variance on the phylogenetic reconstruction of protein sequences. In ACM digital library: Proceedings of 4th International Symposium on Applied Sciences in Biomedical and Communication Technologies. 2011. p. 1-5. ISBN: 978-1-4503-0913- 4.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H. Bootstrap consensus tree in phylogeny reconstruction. In Sborník soutěže Student EEICT 2011. Brno: VUT v Brně, 2011. p. 130-132. ISBN: 978-80-214-4271- 9.
  Detail

  ZÍTKA, O.; ŠKUTKOVÁ, H.; ADAM, V.; TRNKOVÁ, L.; BABULA, P.; HUBÁLEK, J.; PROVAZNÍK, I.; KIZEK, R. A New Approach how to Define the Coefficient of Electroactivity of Adenine and Its Twelve Derivatives Using Flow Injection Analysis with Amperometric Detection. ELECTROANALYSIS, 2011, vol. 23, no. 7, p. 1556-1567. ISSN: 1040-0397.
  Detail

  ZÍTKA, O.; ŠKUTKOVÁ, H.; MAJZLÍK, P.; MASAŘÍK, M.; ADAM, V.; PROVAZNÍK, I.; HUBÁLEK, J.; KIZEK, R. Analytické nástroje pro sledování komplexů platiny. In XXXV. Brněnské onkologické dny. Brno: Masarykův onkologický ústav, 2011. p. 334-335. ISBN: 978-80-86793-17- 7.
  Detail

  MADĚRÁNKOVÁ, D.; PROVAZNÍK, I.; ŠKUTKOVÁ, H. Výukové aplikace pro zpracování genomických dat v bioinformatických předmětech. In Trendy v biomedicínském inženýrství 2011. Ostrava: 2011. p. 56-58. ISBN: 978-80-248-2475- 8.
  Detail

  SEDLÁŘ, K.; SMERKOVÁ, K.; ŠKUTKOVÁ, H.; SOCHOR, J.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. DPPH aqueous antioxidant assay solution. In XI. Pracovní setkání fyzikálních chemiků a elektrochemiků. Brno: 2011. p. 250-254. ISBN: 978-80-7375-514- 0.
  Detail

  ZÍTKA, O.; ŠKUTKOVÁ, H.; KRYŠTOFOVÁ, O.; ŠOBROVÁ, P.; ADAM, V.; ZEHNÁLEK, J.; BEKLOVÁ, M.; HUBÁLEK, J.; PROVAZNÍK, I.; KIZEK, R. Rapid and Ultrasensitive Method for Determination of Phytochelatin2 using High Performance Liquid Chromatography with Electrochemical Detection. INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2011, vol. 2011 (6), no. 5, p. 1367-1381. ISSN: 1452-3981.
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• 2010

  ROP, O.; SOCHOR, J.; JUŘÍKOVÁ, T.; ZÍTKA, O.; ŠKUTKOVÁ, H.; MLČEK, J.; SALAŠ, P.; KRŠKA, B.; BABULA, P.; ADAM, V.; KRAMÁŘOVÁ, D.; BEKLOVÁ, M.; PROVAZNÍK, I.; KIZEK, R. Effect of five different stages of ripening on chemical compounds in medlar (Mespilus germanica L.). MOLECULES, 2010, vol. 16, no. 1, p. 74-91. ISSN: 1420-3049.
  Detail | WWW | Full text in the Digital Library

  SOCHOR, J.; ZÍTKA, O.; ŠKUTKOVÁ, H.; PAVLÍK, D.; BABULA, P.; KRŠKA, B.; HORNA, A.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. Content of phenolic compounds and antioxidant capacity in fruits of selected genotypes of apricot with resistance against Plum pox virus. MOLECULES, 2010, vol. 2010, no. 15, p. 6285-6305. ISSN: 1420-3049.
  Detail | WWW | Full text in the Digital Library

  ŠKUTKOVÁ, H.; PROVAZNÍK, I.; KIZEK, R. Fylogenetická stromová struktura vybraných sub- rodin metallothioneinů. In XIV. Setkání biochemiků a molekulárních biologů. Brno: Muni Press, 2010. p. 77-78. ISBN: 978-80-210-5164- 5.
  Detail

  ŠKUTKOVÁ, H.; PROVAZNÍK, I.; KIZEK, R. Similarity analysis of primary and secondary structures of metallothioneins. In The 10th IEEE International Conference on Information Technology and Applications in Biomedicine: Emerging Technologies for Patient Specific Healthcare. Corfu: IEEE, 2010. p. 1-4. ISBN: 978-1-4244-6560- 6.
  Detail

  ŠKUTKOVÁ, H.; PROVAZNÍK, I.; KIZEK, R. Mutual Similarity of Aminoacid Sequences in Family of Metallothioneins. In Sborník příspěvků. MUNI Brno, 2010. p. 211-212. ISBN: 978-80-7375-396- 2.
  Detail

  ŠKUTKOVÁ, H.; PROVAZNÍK, I.; KIZEK, R. Relationships Of Bacterial Metallothioneins Analyses: Phylogenetic Tree Construction Method. In Analysis of Biomedical Signals and Images. Analysis of Biomedical Signals and Images. Brno: VUT v Brně, 2010. p. 1-6. ISBN: 978-80-214-4106- 4. ISSN: 1211- 412X.
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