Publications

• 2024

  JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; AMSTUTZ, V.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; MRÁZOVÁ, K.; HRUBANOVÁ, K.; ZINN, M.; OBRUČA, S.; SEDLÁŘ, K. Cultivation driven transcriptomic changes in the wild-type and mutant strains of Rhodospirillum rubrum. Computational and Structural Biotechnology Journal, 2024, vol. 23, no. December 2024, p. 2681-2694. ISSN: 2001-0370.
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  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. Small RNA Analysis in Caldimonas thermodepolymerans Provides Insight into Non-Coding Regulatory Mechanisms. 11th International Conference on Chemical Technology Book of Abstracts. 1. 2024. p. 200-200. ISBN: 978-80-88214-48-9.
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  PATÁKOVÁ, P.; VASYLKIVSKA, M.; SEDLÁŘ, K.; JUREČKOVÁ, K.; BEZDÍČEK, M.; LOVECKÁ, P.; BRANSKÁ, B.; KAŠTÁNEK, P.; KROFTA, K. Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.). Frontiers in Microbiology, 2024, vol. 15, no. Neuvedeno, p. 1-15. ISSN: 1664-302X.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. Co-expression analysis of small RNAs and untranslated regions in Rhodospirillum rubrum. Proceedings I of the 30 th Conference STUDENT EEICT 2024. 1. 2024. p. 113-116. ISBN: 978-80-214-6231-1.
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  FIALOVÁ, A.; SEDLÁŘ, K. BacSeqer: Read simulator for bacterial RNA-Seq. In Proceedings II of the 30 th Conference STUDENT EEICT 2024. 1. 2024. p. 12-15. ISBN: 978-80-214-6230-4.
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  KOUBLOVÁ, V.; SEDLÁŘ, K.; SEDLÁČEK, I.; MUSILOVÁ, J.; STAŇKOVÁ, E.; KRÁLOVÁ, S.; KOUDELKOVÁ, S.; KRSEK, D.; ŠVEC, P. Corynebacterium mendelii sp. nov., a novel bacterium isolated from Adélie penguin oral cavity. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2024, vol. 74, no. 1, ISSN: 1466-5026.
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  UMAIR, M.; ŘEHÁKOVÁ, V.; BEZDÍČEK, M.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. Study of Methylomes in Aneurinibacillus Species using Third Generation Sequencing Platform. 9th Meeting on Chemistry & Life, Book of Abstracts. 1. 2024. p. 55-55.
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  UMAIR, M.; ŘEHÁKOVÁ, V.; BUCHTÍKOVÁ, I.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Bioinformatics study of the third generation sequencing platforms applied on a thermophile. Proceedings I of the 30 th Conference STUDENT EEICT 2024. 1. 2024. ISBN: 978-80-214-6231-1.
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  ŠLOSÁROVÁ, K.; BUCHTÍKOVÁ, I.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Two is better than one – linking of thermophilic bacteria to enhance PHA production. book of abstracts. 1. 2024. p. 211-211. ISBN: 978-80-88214-48-9.
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  HRABALOVÁ, V.; OPIAL, T.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Biotransformation of ferulic acid into vanillyl alcohol and vanillic acid employing thermophilic bacterium Caldimonas thermodepolymerans. ENZYME AND MICROBIAL TECHNOLOGY, 2024, vol. 179, no. 9, p. 1-6. ISSN: 0141-0229.
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  MUSILOVÁ, J.; VAFEK, Z.; PUNYIA, B.; ZIMMER, R.; HELIKAR, T.; SEDLÁŘ, K. Augusta: From RNA-Seq to Gene Regulatory Networks and Boolean Models. Computational and Structural Biotechnology Journal, 2024, vol. 23, no. December 2024, p. 783-790. ISSN: 2001-0370.
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  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. PHA-Related Regulatory Small RNAs in Caldimonas Thermodepolymerans. 9th Meeting on Chemistry & Life for Sustainable Future Book of Abstracts. 1. 2024. p. 42-42.
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  HRABALOVÁ, V.; OPIAL, T.; MUSILOVÁ, J.; SEDLÁŘ, K.; POŘÍZKA, J.; DIVIŠ, P.; OBRUČA, S. Conversion of Ferulic Acid by Extremophilic Bacteria. Book of Abstracts. Brno: 2024.
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• 2023

  NOVÁKOVÁ, D.; KOUBLOVÁ, V.; SEDLÁŘ, K.; STAŇKOVÁ, E.; KRÁLOVÁ, S.; ŠVEC, P.; NEUMANN-SCHAAL, M.; WOLF, J.; KOUDELKOVÁ, S.; BARTÁK, M.; SEDLÁČEK, I. Pseudomonas petrae sp. nov. isolated from regolith samples in Antarctica. SYSTEMATIC AND APPLIED MICROBIOLOGY, 2023, vol. 46, no. 4, p. 1-9. ISSN: 0723-2020.
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  UMAIR, M.; SEDLÁŘ, K. DNA Methylation Detection With Pacific Biosciences sequencing and Oxford Nanopore sequencing Technology. PROCEEDINGS I OF THE 29TH STUDENT EEICT 2023. 2023. p. 275-278. ISBN: 978-80-214-6153-6.
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  NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; SLANINOVÁ, E.; OBRUČA, S.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Transcriptome Analysis of Rhodospirillum rubrum - Wild Type and Mutant Strains. 11th European Symposium on Biopolymer (ESBP). 2023.
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  FLEURIOT-BLITMAN, H.; AMSTUTZ, V.; NYKRÝNOVÁ, M.; SLANINOVÁ, E.; SEDLÁŘ, K.; SEDLÁČEK, P.; OBRUČA, S.; HATZIMANIKATIS, V.; ZINN, M. Investigating the Relationship Between Respiratory Chain Activity and the Electron Sink Mechanism of Poly(3-hydroxybutyrate) (PHB) Accumulation in Rhodospirillum rubrum. 11th European Symposium on Biopolymer (ESBP). 2023.
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  JUREČKOVÁ, K.; SLANINOVÁ, E.; OBRUČA, S.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Differential expression analysis of RNA-Seq data for identification of housekeeping genes in Rhodospirillum rubrum DSM 467. 11th European Symposium on Biopolymer (ESBP). 2023.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparative genomic analysis of two Schlegelella species brings novel insights into polyhydroxyalkanoates production. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
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  PERNICOVÁ, I.; KOUŘILOVÁ, X.; ŘEHÁKOVÁ, V.; DYAGILEV, D.; MARKOVÁ, L.; SEDLÁŘ, K.; MUSILOVÁ, J.; SEDLÁČEK, P.; OBRUČA, S. Rod Aneurinibacillus – unikátní bakterie mezi termofilními producenty polyhydroxyalkanoátů. Book of abstracts of the 10th International Conference on Chemical Technology. 1. Praha: AMCA, spol. s.r.o., 2023. p. 19-19. ISBN: 978-80-88214-40-3.
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  ŘEHÁKOVÁ, V.; PERNICOVÁ, I.; KOUŘILOVÁ, X.; SEDLÁČEK, P.; MUSILOVÁ, J.; SEDLÁŘ, K.; KOLLER, M.; KALINA, M.; OBRUČA, S. Biosynthesis of versatile PHA copolymers by thermophilic members of the genus Aneurinibacillus. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2023, vol. 225, no. 225, p. 1588-1598. ISSN: 0141-8130.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Production of biodegradable polymers by thermophilic bacteria. Czech Chemical Society Symposium Series 2. Czech chemical society symposium series. Praha: Česká společnost chemická, 2023. p. 90-90. ISSN: 2336-7202.
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  MUSILOVÁ, J.; VAFEK, Z.; HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; OBRUČA, S.; PUNYIA, B.; HELIKAR, T.; SEDLÁŘ, K. Introducing Augusta, a Python package for inferring Gene Regulatory and Boolean Networks from RNA-Seq data, and its application to the Caldimonas thermodepolymerans DSM 15344T. 2023.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Využitelnost termofilních bakterií jako producentů biopolymerů. Book of abstracts of the 10th International Conference on Chemical Technology. 1. Praha: AMCA, spol. s.r.o., 2023. p. 20-20. ISBN: 978-80-88214-40-3.
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  NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; SLANINOVÁ, E.; OBRUČA, S.; HANSLIKOVA, J.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Genomic and phenotypic analysis of Rhodospirillum rubrum – wild type and mutant strain. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Caldimonas thermodepolymerans - PHA producer with unique properties. 16th International Congress "Thermophiles-2023. Wales, United Kingdom: Bangor University, 2023. p. P15 ( p.)
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Thermophilic PHA Producer sui generis - Caldimonas thermodepolymerans. European Symposium on Biopolymers. Brno: 2023. p. L32 ( p.)
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; IEREMENKO, A.; DVOŘÁK, P.; OBRUČA, S.; SEDLÁŘ, K. Genomic and Phenotypic Comparison of Polyhydroxyalkanoates Producing Strains of genus Caldimonas/Schlegelella. Computational and Structural Biotechnology Journal, 2023, vol. 21, no. November, p. 5372-5381. ISSN: 2001-0370.
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  ŠVEC, P.; BUSSE, H.; SEDLÁŘ, K.; MUSILOVÁ, J.; KRÁLOVÁ, S.; STAŇKOVÁ, E.; ŠEDO, O.; KRSEK, D.; KOUBLOVÁ, V.; KRIŠTOFOVÁ, L.; SEDLÁČEK, I. Corynebacterium antarcticum sp. nov., Corynebacterium marambiense sp. nov., Corynebacterium meridianum sp. nov., and Corynebacterium pygosceleis sp. nov., isolated from Adelie penguins (Pygoscelis adeliae). SYSTEMATIC AND APPLIED MICROBIOLOGY, 2023, vol. 46, no. 1, ISSN: 0723-2020.
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• 2022

  SEDLÁŘ, K.; MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; OBRUČA, S. Diversity of Schlegelella thermodepolymerans Revealed with Nanopore Sequencing. In Proceedings of the 9th International Conference on Chemical Technology. Prague: Czech Society of Industrial Chemistry, 2022. p. 373-378. ISBN: 978-80-88307-11-2.
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  PLOCKOVÁ, V.; SEDLÁŘ, K. Properties of Current Signals in Nanopore Sequencing. In Proceedings I of the 28th Conference STUDENT EEICT 2022. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022. p. 120-123. ISBN: 978-80-214-6029-4.
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  POLAKOVIČOVÁ, P.; SEDLÁŘ, K. The COG-or: the Improved Functional Annotation of Bacterial Genomes. In Proceedings II of the 28st Conference STUDENT EEICT 2022: Selected papers. 2022. p. 84-87. ISBN: 978-80-214-6030-0.
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  SEDLÁŘ, K.; MUSILOVÁ, J.; ŠKUTKOVÁ, H.; NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; PERNICOVÁ, I.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; ZINN, M.; OBRUČA, S. Improving structural annotation of Rhodospirillum rubrum DSM 467 with RNA-Seq. 18th International Symposium on Biopolymers (ISBP). 2022.
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  SEDLÁŘ, K.; ZIMMER, R. Comparison of Stranded and Non-stranded RNA-Seq in Predicting Small RNAs in a Non-model Bacterium. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 13347. Springer Nature, 2022. p. 45-56. ISBN: 978-3-031-07802-6. ISSN: 1611-3349.
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  POMYKALOVÁ, B.; POLZEROVÁ, N.; NEJEZCHLEBOVÁ, J.; SCHWARZEROVÁ, J.; JUREČKOVÁ, K.; SEDLÁŘ, K. Advanced annotation related to gene regulation in Clostridium beijerinckii NRRL B-598. The Biomania Student Scientific Meeting 2022 - Book of Abstracts. Brno: Masaryk University Press, 2022. p. 136-136. ISBN: 978-80-280-0040-0.
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  SCHWARZEROVÁ, J.; KOŠTOVAL, A.; BAJGER, A.; JAKUBIKOVA, L.; PIERDIES, I.; POPELINSKY, L.; SEDLÁŘ, K.; WECKWERTH, W. A Revealed Imperfection in Concept Drift Correction in Metabolomics Modeling. In Information Technology in Biomedicine. Springer, 2022. p. 498-509. ISBN: 978-3-031-09135-3.
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  SCHWARZEROVÁ, J.; PIERDIES, I.; SEDLÁŘ, K.; WECKWERTH, W. Linear Predictive Modeling for Immune Metabolites Related to Other Metabolites. In Bioinformatics and Biomedical Engineering. Springer, 2022. p. 16-27. ISBN: 978-3-031-07704-3.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; SEDLÁŘ, K. Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960. Applied Microbiology and Biotechnology, 2022, vol. 106, no. 12, p. 1-13. ISSN: 1432-0614.
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  SCHWARZEROVÁ, J.; NEMČEKOVÁ, P.; PIERDIES, I.; NOHEL, M.; CHMELÍK, J.; SEDLÁŘ, K.; WECKWERTH, W. OMICs prediction for Hordeum vulgare using Random Forest methodology. The Biomania Student Scientific Meeting 2022, Book of abstract. 1st. Brno: Masaryk University Press, 2022. p. 52-52. ISBN: 978-80-280-0040-0.
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  SEDLÁČEK, I.; HOLOCHOVÁ, P.; BUSSE, H.; KOUBLOVÁ, V.; KRÁLOVÁ, S.; ŠVEC, P.; SOBOTKA, R.; STAŇKOVÁ, E.; PILNÝ, J.; ŠEDO, O.; SMOLÍKOVÁ, J.; SEDLÁŘ, K. Characterisation of Waterborne Psychrophilic Massilia Isolates with Violacein Production and Description of Massilia antarctica sp. nov. Microorganisms, 2022, vol. 10, no. 4, p. 1-14. ISSN: 2076-2607.
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  OBRUČA, S.; DVOŘÁK, P.; SEDLÁČEK, P.; KOLLER, M.; SEDLÁŘ, K.; PERNICOVÁ, I.; ŠAFRÁNEK, D. Polyhydroxyalkanoates synthesis by halophiles and thermophiles: towards sustainable production of microbial bioplastics. BIOTECHNOLOGY ADVANCES, 2022, vol. 58, no. 9, p. 1-28. ISSN: 0734-9750.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Some (Bacteria) Like It Hot - Towards Sustianable Produciton of Bioplastics Employing Thermophilic Bacteria. The Biomania Student Scientific Meeting 2022, Book of abstract. 1st. Brno: Masaryk University Press, 2022. p. 123-123. ISBN: 978-80-280-0040-0.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; VIDLÁKOVÁ, M.; SEDLÁŘ, K.; OBRUČA, S. K udržitelné produkci biopolymerů pomocí termofilních mikroorganismů. 2022.
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  NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; ŠKUTKOVÁ, H.; SLANINOVÁ, E.; OBRUČA, S.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Gene expression profiling in Rhodospirillum rubrum. 18th International Symposium on Biopolymers (ISBP). 2022.
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  FLEURIOT-BLITMAN, H.; AMSTUTZ, V.; NYKRÝNOVÁ, M.; SLANINOVÁ, E.; SEDLÁŘ, K.; SEDLÁČEK, P.; OBRUČA, S.; HATZIMANIKATIS, V.; ZINN, M. Increased CO2 gas-liquid mass transfer interferes with Rhodospirillum rubrum’s physiology and production of poly-3-hydroxybutyrate. 18th International Symposium on Biopolymers (ISBP). 2022.
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  ŠVEC, P.; KRÁLOVÁ, S.; STAŇKOVÁ, E.; HOLOCHOVÁ, P.; SEDLÁŘ, K.; KOUDELKOVÁ, S.; KRSEK, D.; GRZESIAK, J.; ŠEDO, O.; VÁCZI, P.; URVASHI, U.; GUPTA, V.; SOOD, U.; LAL, R.; KORPOLE, S.; SEDLÁČEK, I. Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2022, vol. 72, no. 4, p. 1-9. ISSN: 1466-5026.
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  JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; SLANINOVÁ, E.; BEZDÍČEK, M.; OBRUČA, S.; ŠKUTKOVÁ, H.; SEDLÁŘ, K. Genomic and functional analysis of polyhydroxyalkanoates producer Rhodospirillum rubrum DSM 467. In Proceedings of the 9th International Conference on Chemical Technology. Prague: Czech Society of Industrial Chemistry, 2022. p. 367-372. ISBN: 978-80-88307-11-2.
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  PERNICOVÁ, I.; KOUŘILOVÁ, X.; ŘEHÁKOVÁ, V.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. “Hot” producers of polyhydroxyalkanoates as the future of the biotechnological industry. 2022.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparison of short and long reads in structural and functional annotation of non-model bacteria. 2022. p. 11-11.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. The Pathway Analysis of Tepidimonas taiwanensis LMG 22826T, Polyhydroxyalkanoate and Alkaline Protease Producer. In Proceedings II of the 28st Conference STUDENT EEICT 2022: Selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022. p. 166-169. ISBN: 978-80-214-6030-0.
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• 2021

  BRANSKÁ, B.; VASYLKIVSKA, M.; RASCHMANOVÁ, H.; JUREČKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Changes in efflux pump activity of Clostridium beijerinckii throughout ABE fermentation. Applied Microbiology and Biotechnology, 2021, vol. 105, no. 1, p. 1-13. ISSN: 1432-0614.
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  JUGAS, R.; SEDLÁŘ, K.; VÍTEK, M.; NYKRÝNOVÁ, M.; BARTOŇ, V.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. CNproScan: Hybrid CNV detection for bacterial genomes. GENOMICS, 2021, vol. 113, no. 5, p. 3103-3111. ISSN: 0888-7543.
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  JUREČKOVÁ, K.; RASCHMANOVÁ, H.; KOLEK, J.; VASYLKIVSKA, M.; BRANSKÁ, B.; PATÁKOVÁ, P.; PROVAZNÍK, I.; SEDLÁŘ, K. Identification and validation of reference genes in Clostridium beijerinckii NRRL B-598 for RT-qPCR using RNA-Seq data. Frontiers in Microbiology, 2021, vol. 12, no. 1, p. 1-10. ISSN: 1664-302X.
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  PATÁKOVÁ, P.; BRANSKÁ, B.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; PROVAZNÍK, I.; SEDLÁŘ, K. Transcriptomic studies of solventogenic clostridia, Clostridium acetobutylicum and Clostridium beijerinckii. BIOTECHNOLOGY ADVANCES, 2021, vol. 58, no. 1, p. 1-18. ISSN: 1873-1899.
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  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; SEDLÁŘ, K. Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer. GENOME BIOL EVOL, 2021, vol. 13, no. 12, p. 1-5. ISSN: 1759-6653.
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  SEDLÁŘ, K.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; BRANSKÁ, B.; LENGEROVÁ, M.; PATÁKOVÁ, P.; ŠKUTKOVÁ, H. Diversity and Evolution of Clostridium beijerinckii and Complete Genome of the Type Strain DSM 791T. Processes, 2021, vol. 9, no. 7, p. 1-16. ISSN: 2227-9717.
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  NYKRÝNOVÁ, M.; BARTOŇ, V.; SEDLÁŘ, K.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H. Word entropy-based approach to detect highly variable genetic markers for bacterial genotyping. Frontiers in Microbiology, 2021, vol. 12, no. 1, p. 1-8. ISSN: 1664-302X.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; ŠKUTKOVÁ, H.; SEDLÁŘ, K. First Complete Genome of the Thermophilic Polyhydroxyalkanoates Producing Bacterium Schlegelella thermodepolymerans DSM 15344. GENOME BIOL EVOL, 2021, vol. 13, no. 4, p. 1-13. ISSN: 1759-6653.
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  KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Screening cultivation mode and production of the new bacterium Aneurinibacillus thermoaerophilus CCM 8960. The Eurobiotech Journal. Sciendo, 2021. p. 98-98.
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  MUSILOVÁ, J.; KOUŘILOVÁ, X.; OBRUČA, S.; SEDLÁŘ, K.; LENGEROVÁ, M.; BEZDÍČEK, M. Potential functional capacity of a non-model organism Aneurinibacillus species H1. 2021.
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  KOUŘILOVÁ, X.; SCHWARZEROVÁ, J.; PERNICOVÁ, I.; SEDLÁŘ, K.; MRÁZOVÁ, K.; KRZYŽÁNEK, V.; NEBESÁŘOVÁ, J.; OBRUČA, S. The First Insight into Polyhydroxyalkanoates Accumulation in Multi-Extremophilic Rubrobacter xylanophilus and Rubrobacter spartanus. Microorganisms, 2021, vol. 9, no. 5, p. 1-13. ISSN: 2076-2607.
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  SEDLÁČEK, I.; HOLOCHOVÁ, P.; SOBOTKA, R.; BUSSE, H.; ŠVEC, P.; KRÁLOVÁ, S.; ŠEDO, O.; PILNÝ, J.; STAŇKOVÁ, E.; KOUBLOVÁ, V.; SEDLÁŘ, K. Classification of a Violacein-Producing Psychrophilic Group of Isolates Associated with Freshwater in Antarctica and Description of Rugamonas violacea sp. nov. Microbiology spectrum, 2021, vol. 9, no. 1, p. 1-14. ISSN: 2165-0497.
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  SCHWARZEROVÁ, J.; BAJGER, A.; PIERDOU, I.; POPELINSKY, L.; SEDLÁŘ, K.; WECKWERTH, W. An Innovative Perspective on Metabolomics Data Analysis in Biomedical Research Using Concept Drift Detection. In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Institute of Electrical and Electronics Engineers Inc., 2021. p. 3075-3082. ISBN: 978-1-6654-0126-5.
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  SCHWARZEROVÁ, J.; MUSILOVÁ, J.; JUREČKOVÁ, K.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Operon Structure Inference in Clostridium beijerinckii NRRL B-589 using RNA-Seq. In 8th International Conference on Chemical Technology. 2021. p. 284-289. ISBN: 978-80-88307-08-2.
  Detail

  BEZDÍČEK, M.; NYKRÝNOVÁ, M.; SEDLÁŘ, K.; KRÁLOVÁ, S.; HANSLIKOVA, J.; KOMPRDOVÁ, A.; ŠKUTKOVÁ, H.; KOCMANOVÁ, I.; MAYER, J.; LENGEROVÁ, M. Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms. Scientific Reports, 2021, vol. 11, no. 1, p. 1-11. ISSN: 2045-2322.
  Detail | WWW | Full text in the Digital Library

  MUSILOVÁ, J.; SEDLÁŘ, K. Tools for Time-Course Simulation in Systems Biology: A Brief Overview. Briefings in Bioinformatics, 2021, vol. 22, no. 5, p. 1-15. ISSN: 1477-4054.
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• 2020

  PATÁKOVÁ, P.; KOLEK, J.; JUREČKOVÁ, K.; BRANSKÁ, B.; SEDLÁŘ, K.; VASYLKIVSKA, M.; PROVAZNÍK, I. Deeper below the surface – transcriptional changes of selected Clostridium beijerinckii NRRL B-598 genes induced by butanol shock. MicrobiologyOpen, 2020, vol. 00, no. 0, p. 1-14. ISSN: 2045-8827.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; VASYLKIVSKA, M.; MUSILOVÁ, J.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P. Phenotypic and genomic analysis of isopropanol and 1,3-propanediol producer Clostridium diolis DSM 15410. GENOMICS, 2020, vol. 113, no. 1, p. 1109-1119. ISSN: 0888-7543.
  Detail | WWW | Full text in the Digital Library

  KOUŘILOVÁ, X.; PERNICOVÁ, I.; SEDLÁŘ, K.; MUSILOVÁ, J.; SEDLÁČEK, P.; KALINA, M.; KOLLER, M.; OBRUČA, S. Production of polyhydroxyalkanoates (PHA) by a thermophilic strain of Schlegelella thermodepolymerans from xylose rich substrates. BIORESOURCE TECHNOLOGY, 2020, vol. 315, no. 8, p. 1-7. ISSN: 0960-8524.
  Detail | WWW

  KOUŘILOVÁ, X.; MUSILOVÁ, J.; SEDLÁŘ, K.; BEDNÁROVÁ, K.; PERNICOVÁ, I.; OBRUČA, S. Thermophilic Bacterium Schlegelella thermodepolymerans DSM 15344 as a Producer of Polyhydroxyalkanoates. Studentská odborná konference CHEMIE JE ŽIVOT 2020. Brno: Vysoké učení technické v Brně, Fakulta chemická, 2020. p. 90-91. ISBN: 978-80-214-5920-0.
  Detail

  VASYLKIVSKA, M.; BRANSKÁ, B.; SEDLÁŘ, K.; JUREČKOVÁ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Phenotypic and genomic analysis of Clostridium beijerinckii NRRL B-598 mutants with increased butanol tolerance. Frontiers in Bioengineering and Biotechnology, 2020, vol. 8, no. 1, p. 1-18. ISSN: 2296-4185.
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• 2019

  SEDLÁŘ, K.; GRUBER, M.; BRANSKÁ, B.; CSABA, G.; ZIMMER, R.; PATÁKOVÁ, P.; PROVAZNÍK, I. Gene Ontology Annotation of Clostridium beijerinckii NRRL B-598 genome. 7th International Conference on Chemical Technology BOOK OF ABSTRACTS, FULL PAPERS. 2019. p. 1 (1 s.). ISBN: 978-80-88307-01-3.
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  BRANSKÁ, B.; VASYLKIVSKA, M.; SEDLÁŘ, K.; JUREČKOVÁ, K.; PATÁKOVÁ, P. Flow cytometry for better insight into the physiology of sporulating bacteria. 4th International Symposium on the Genetics of Industrial Microorganisms - Abstracts. 2019. p. 212-212.
  Detail | WWW

  VASYLKIVSKA, M.; JUREČKOVÁ, K.; BRANSKÁ, B.; SEDLÁŘ, K.; KOLEK, J.; PROVAZNÍK, I.; PATÁKOVÁ, P. Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598. PLOS ONE, 2019, vol. 14, no. 11, p. 1-19. ISSN: 1932-6203.
  Detail | WWW | Full text in the Digital Library

  VÍDEŇSKÁ, P.; ŠMERKOVÁ, K.; ZWINSOVÁ, B.; POPOVICI, V.; MICENKOVÁ, L.; SEDLÁŘ, K.; BUDINSKÁ, E. Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform. Scientific Reports, 2019, vol. 2019, no. 9, p. 1-14. ISSN: 2045-2322.
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  BEZDÍČEK, M.; NYKRÝNOVÁ, M.; PLEVOVÁ, K.; BRHELOVÁ, E.; KOCMANOVÁ, I.; SEDLÁŘ, K.; RÁČIL, Z.; MAYER, J.; LENGEROVÁ, M. Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population. PLOS ONE, 2019, vol. 14, no. 8, p. 1-14. ISSN: 1932-6203.
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  SEDLÁŘ, K.; KOLEK, J.; GRUBER, M.; JUREČKOVÁ, K.; BRANSKÁ, B.; CSABA, G.; VASYLKIVSKA, M.; ZIMMER, R.; PATÁKOVÁ, P.; PROVAZNÍK, I. A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock. BIOTECHNOL BIOFUELS, 2019, vol. 12, no. 1, p. 1-16. ISSN: 1754-6834.
  Detail | WWW | Full text in the Digital Library

  ŠKUTKOVÁ, H.; MADĚRÁNKOVÁ, D.; SEDLÁŘ, K.; JUGAS, R.; VÍTEK, M. A degeneration-reducing criterion for optimal digital mapping of genetic codes. Computational and Structural Biotechnology Journal, 2019, vol. 17, no. 1, p. 406-414. ISSN: 2001-0370.
  Detail | WWW

  JUREČKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I. Identification of housekeeping genes in Clostridium beijerinckii NRRL B-598 RNA-Seq transcriptome. In Proceedings of the 7th International Conference on Chemical Technology. Czech Society of Industrial Chemistry, 2019. p. 67-71. ISBN: 978-80-88307-00-6.
  Detail | WWW

  JUGAS, R.; SEDLÁŘ, K.; VÍTEK, M.; ŠKUTKOVÁ, H. CNV Hybrid Detection in Bacteria Using Signal Processing. International Conference of the Genetics Society of Korea 2019 : New Horizons of Genetics. 1. Seoul, Republic of Korea: The Genetics Society of Korea, 2019. p. 101-101.
  Detail | WWW

  PATÁKOVÁ, P.; BRANSKÁ, B.; SEDLÁŘ, K.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; KOLEK, J.; CICKOVÁ, P.; PROVAZNÍK, I. Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level. Scientific Reports, 2019, vol. 9, no. 1, p. 1-21. ISSN: 2045-2322.
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  MUSILOVÁ, J.; JUREČKOVÁ, K.; KOLEK, J.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In Proceedings of the 7th International Conference on Chemical Technology. Czech Society of Industrial Chemistry, 2019. p. 46-52. ISBN: 978-80-88307-00-6.
  Detail | WWW

  MADĚRÁNKOVÁ, D.; JUGAS, R.; SEDLÁŘ, K.; VÍTEK, M.; ŠKUTKOVÁ, H. Rapid bacterial species delineation based on parameters derived from genome numerical representations. Computational and Structural Biotechnology Journal, 2019, vol. 17, no. 1, p. 118-126. ISSN: 2001-0370.
  Detail | WWW

  JUREČKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I. Pipeline for visualization of gene expression profiles of Clostridium beijerinckii NRRL B-598. In Proceedings of IEEE Student Branch Conference Mikulov 2019. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2019. p. 10-12. ISBN: 978-80-214-5781-2.
  Detail | WWW

  PATÁKOVÁ, P.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; KOLEK, J.; BRANSKÁ, B.; SEDLÁŘ, K. Stress response to butyric acid and butanol formation in Clostridium beijerinckii at transcriptional level. 14th International Symposium on the Genetics of Industrial Microorganisms - Abstracts. 2019. p. 209-209.
  Detail

• 2018

  PATÁKOVÁ, P.; KOLEK, J.; SEDLÁŘ, K.; KOŠČOVÁ, P.; BRANSKÁ, B.; KUPKOVÁ, K.; PAULOVÁ, L.; PROVAZNÍK, I. Comparative analysis of high butanol tolerance and production in clostridia. BIOTECHNOLOGY ADVANCES, 2018, vol. 35, no. 8, p. 721-738. ISSN: 0734-9750.
  Detail | WWW

  JUGAS, R.; VÍTEK, M.; SEDLÁŘ, K.; ŠKUTKOVÁ, H. Cross-Correlation Based Detection of Contigs Overlaps. In MIPRO 2018 proceedings. New York: IEEE, 2018. p. 155-158. ISBN: 978-953-233-095-3.
  Detail | WWW

  JUREČKOVÁ, K.; KOŠČOVÁ, P.; SEDLÁŘ, K.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. In Silico Prediction of Genes Coding Efflux Pumps in Clostridium Beijerinckii NRRL B-598. In Proceedings of the 6th International Conference on Chemical Technology (ICCT). 2018. p. 86-90. ISBN: 978-80-86238-77-7.
  Detail

  SEDLÁŘ, K.; KOŠČOVÁ, P.; VASYLKIVSKA, M.; BRANSKÁ, B.; KOLEK, J.; KUPKOVÁ, K.; PATÁKOVÁ, P.; PROVAZNÍK, I. Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq. BMC GENOMICS, 2018, vol. 19, no. 415, p. 1 (1 s.). ISSN: 1471-2164.
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• 2017

  KOLEK, J.; DIALLO, M.; VASYLKIVSKA, M.; BRANSKÁ, B.; SEDLÁŘ, K.; LOPEZ-CONTRERAS, A.; PATÁKOVÁ, P. Comparison of expression of key sporulation, solventogenic and acetogenic genes in C. beijerinckii NRRL B-598 and its mutant strain overexpressing spo0A. Applied Microbiology and Biotechnology, 2017, vol. 101, no. 22, p. 8279-8291. ISSN: 1432-0614.
  Detail

  SEDLÁŘ, K.; KOLEK, J.; PROVAZNÍK, I.; PATÁKOVÁ, P. Reclassification of non-type strain Clostridium pasteurianum NRRL B-598 as Clostridium beijerinckii NRRL B-598. Journal of Biotechnology, 2017, vol. 244, no. 1, p. 1-3. ISSN: 0168-1656.
  Detail | WWW

  SEDLÁŘ, K.; BRANSKÁ, B.; KUPKOVÁ, K.; KOŠČOVÁ, P.; KOLEK, J.; VASYLKIVSKA, M.; PATÁKOVÁ, P.; PROVAZNÍK, I. Analysis of Clostridium beijerinckii NRRL B-598 coding regions using RNA-Seq data of a closely related strain. In Proceedings of the 5th International Conference on Chemical Technology. 1. Praha: Ocean Design, 2017. p. 87-91. ISBN: 978-80-86238-62-3.
  Detail | WWW

  SEDLÁŘ, K.; KOŠČOVÁ, P.; KUPKOVÁ, K.; VASYLKIVSKA, M.; BRANSKÁ, B.; PATÁKOVÁ, P.; PROVAZNÍK, I. Genome mining for biorefinery use. Biotech 2017 and 7th czech-swiss symposium with Exhibition Book of Abstracts. first. Praha: 2017. p. 48-48. ISBN: 978-80-7080-989-1.
  Detail

  KOLEK, J.; DIALLO, M.; LOPEZ-CONTRERAS, A.; SEDLÁŘ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Gene expression of sporulation factors in Clostridium beijerinckii during solventogenesis. Biotech 2017 and 7th czech-swiss symposium with Exhibition Book of Abstracts. first. Praha: 2017. p. 49-49. ISBN: 978-80-7080-989-1.
  Detail

  PATÁKOVÁ, P.; PAULOVÁ, L.; BRANSKÁ, B.; KOLEK, J.; SEDLÁŘ, K.; PROVAZNÍK, I. Microbial production required metabolites plant/animal biorefinery. Biotech 2017 and 7th czech-swiss symposium with Exhibition Book of Abstracts. first. Praha: 2017. p. 44-44. ISBN: 978-80-7080-989-1.
  Detail

  KOŠČOVÁ, P.; SEDLÁŘ, K.; KUPKOVÁ, K.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. TERTIARY STRUCTURE PREDICTION OF POTENTIAL EFFLUX-PUMP PROTEIN IN CLOSTRIDIUM BEBERINCKII NRRL B-598. In Proceedings of the 5th International Conference on Chemical Technology. 1. Praha: Ocean Design, 2017. p. 26-30. ISBN: 978-80-86238-62-3.
  Detail | WWW

  JUGAS, R.; SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍTEK, M. Overlap detection for a genome assembly based on genomic signal processing. In 2017 IEEE 30th International Symposium on Computer-Based Medical Systems. Proceedings of the ... IEEE International Symposium on Computer-Based Medical Systems. USA: IEEE Computer Society, 2017. p. 301-305. ISBN: 978-1-5386-1710-6. ISSN: 2372-9198.
  Detail | WWW

  MADĚRÁNKOVÁ, D.; SEDLÁŘ, K.; VÍTEK, M.; ŠKUTKOVÁ, H. The identification of replication origin in bacterial genomes by cumulated phase signal. In 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). IEEE, 2017. p. 267-271. ISBN: 978-1-4673-8988-4.
  Detail | WWW

  KUPKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I. Reference-free Identification of Phage DNA Using Signal Processing on Nanopore Data. In 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Washington DC: Conference Publishing Services, 2017. p. 101-105. ISBN: 978-1-5386-1324-5.
  Detail

  KUPKOVÁ, K.; PROVAZNÍK, I.; SEDLÁŘ, K.; HON, J.; MARTÍNEK, T.; ZENDULKA, J. Visualization of Nanopore Sequencing Data in Metagenomics. Praha: 2017. p. 1 (1 s.).
  Detail | WWW

• 2016

  KUPKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I. Correlated Mutation Analysis Improvement by, Proteomic Signal Processing. In Sborník příspěvků studentské konference Blansko 2016. Brno: 2016. p. 47-50. ISBN: 978-80-214-5389- 0.
  Detail | WWW

  KUPKOVÁ, K.; SEDLÁŘ, K.; PROVAZNÍK, I. Multidimensional Correlated Mutation Analysis for Protein Contact Map Prediction. In Information Technologies in Medicine, 5th International Conference, ITIB 2016 Kamień Śląski, Poland, June 20 - 22, 2016 Proceedings, Volume 2. Advances in Intelligent Systems and Computing. Německo: Springer International Publishing, 2016. p. 133-144. ISBN: 9783319399034. ISSN: 2194-5357.
  Detail

  SEDLÁŘ, K.; KUPKOVÁ, K.; PROVAZNÍK, I. Rychlá deterministická vizualizace shotgun metagenomických dat. Konferenční sborník ENBIK2016. 1. 2016. p. 11-11. ISBN: 978-80-7080-960-0.
  Detail

  SEDLÁŘ, K. Signal Based Feature Selection for Fast Classification of Sequences in Metagenomics. In Proceedings of the 22nd Conference STUDENT EEICT 2016. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních, 2016. p. 558-562. ISBN: 978-80-214-5350- 0.
  Detail

  SEDLÁŘ, K.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Taxonomy and Phylogeny of Industrial Solvent-Producing Clostridia on a Genome-Wide Scale. 4. mezinárodní chemicko-technologická konference SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. Mikulov: 2016. p. 1 (1 s.). ISBN: 978-80-86238-91-3.
  Detail

  LORENCOVÁ, A.; KAEVSKA, M.; VÍDEŇSKÁ, P.; SEDLÁŘ, K.; PROVAZNÍK, I.; TRČKOVÁ, M. Effect of sodium humate and zinc oxide on health status and faecal bacterial communities in weaned piglets. In Proceedings of 12th International Scientific Conference on Animal Physiology. 2016. p. 171-176. ISBN: 978-80-7509-416- 2.
  Detail

  SEDLÁŘ, K.; VÍDEŇSKÁ, P.; ŠKUTKOVÁ, H.; RYCHLÍK, I.; PROVAZNÍK, I. Bipartite Graphs for Visualization Analysis of Microbiome Data. EVOLUTIONARY BIOINFORMATICS, 2016, vol. 12, no. S1, p. 17-23. ISSN: 1176-9343.
  Detail | WWW | Full text in the Digital Library

  KOLEK, J.; SEDLÁŘ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Development of Methods for Genetic Manipulation of Solventogenic, Non- Type Strain Clostridium Pasteurianum. 4. mezinárodní chemicko- technologická konference SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. Mikulov: 2016. p. 1 (1 s.). ISBN: 978-80-86238-91- 3.
  Detail

  SEDLÁŘ, K.; KUPKOVÁ, K.; PROVAZNÍK, I. Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics. Computational and Structural Biotechnology Journal, 2016, vol. 15, no. 1, p. 48-55. ISSN: 2001-0370.
  Detail | WWW | Full text in the Digital Library

  KAEVSKA, M.; LORENCOVÁ, A.; VÍDEŇSKÁ, P.; SEDLÁŘ, K.; PROVAZNÍK, I.; TRČKOVÁ, M. Effect of sodium humate and zinc oxide used in prophylaxis of post-weaning diarrhoea on faecal microbiota composition in weaned piglets. Veterinární medicína, 2016, vol. 61, no. 6, p. 328-336. ISSN: 0375-8427.
  Detail

  KAEVSKA, M.; VÍDEŇSKÁ, P.; SEDLÁŘ, K.; SLANÁ, I. Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing. SpringerPlus, 2016, vol. 5, no. 409, p. 1-8. ISSN: 2193-1801.
  Detail | WWW | Full text in the Digital Library

  KOLEK, J.; SEDLÁŘ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation. BIOTECHNOL BIOFUELS, 2016, vol. 9, no. 1, p. 1-14. ISSN: 1754-6834.
  Detail | WWW | Full text in the Digital Library

  KAEVSKA, M.; VÍDEŇSKÁ, P.; SEDLÁŘ, K.; BARTEJSOVÁ, I.; KRÁLOVÁ, A.; SLANÁ, I. Faecal bacterial composition in dairy cows shedding Mycobacterium avium subsp. paratuberculosis in faeces in comparison to non-shedding cows. CANADIAN JOURNAL OF MICROBIOLOGY, 2016, vol. 1, no. 1, p. 1-5. ISSN: 0008-4166.
  Detail | WWW

• 2015

  SNOPKOVÁ, K.; SEDLÁŘ, K.; BOSÁK, J.; CHALOUPKOVÁ, E.; PROVAZNÍK, I.; ŠMAJS, D. Complete genome sequence of Pragia fontium 24613, an environmental bacterium from the family Enterobacteriaceae. Genome Announcements, 2015, vol. 3, no. 4, p. e00740- 15 ( p.)ISSN: 2169-8287.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍTEK, M.; PROVAZNÍK, I. Set of rules for genomic signal downsampling. COMPUTERS IN BIOLOGY AND MEDICINE, 2015, vol. 64, no. p1, p. 1-7. ISSN: 0010-4825.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; KOLEK, J.; ŠKUTKOVÁ, H.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P. Complete genome sequence of Clostridium pasteurianum NRRL B-598, a non-type strain producing butanol. Journal of Biotechnology, 2015, vol. 214, no. 1, p. 113-114. ISSN: 0168-1656.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍDEŇSKÁ, P.; RYCHLÍK, I.; PROVAZNÍK, I. Bipartite Graphs for Metagenomic Data Analysis and Visualization. In Proceedings 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015). 1. Washington D.C.: IEEE, 2015. p. 1123-1128. ISBN: 978-1-4673-6798-1.
  Detail | WWW

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Bacterial Genome Assembly in Biotechnology: Clostridium Pasteurianum NRRL B- 598 Genome. 3. mezinárodní chemicko- technologická konference, SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. Mikulov: Academic and Medical Conference Agency, 2015. p. 1 (1 s.). ISBN: 978-80-86238-73- 9.
  Detail

  GERŽOVÁ, L.; BABÁK, V.; SEDLÁŘ, K.; FALDYNOVÁ, M.; VÍDEŇSKÁ, P.; ČEJKOVÁ, D.; NYGAARD JENSEN, A.; DENIS, M.; KEROUANTON, A.; RICCI, A.; CIBIN, V.; ÖSTERBERG, J.; RYCHLÍK, I. Characterization of antibiotic resistance gene abundance and microbiota composition in feces of organic and conventional pigs from four EU countries. PLOS ONE. USA: Plos, 2015. p. 1-10. ISSN: 1932-6203.
  Detail | WWW | Full text in the Digital Library

  ŠKUTKOVÁ, H.; VÍTEK, M.; SEDLÁŘ, K.; PROVAZNÍK, I. Progressive alignment of genomic signals by multiple dynamic time warping. Journal of Theoretical Biology, 2015, vol. 2015, no. 385, p. 20-30. ISSN: 0022-5193.
  Detail | WWW | Full text in the Digital Library

  RYCHLÍK, I.; GERŽOVÁ, L.; BABÁK, V.; SEDLÁŘ, K.; FALDYNOVÁ, M.; VÍDEŇSKÁ, P.; ČEJKOVÁ, D. Výskyt genů pro rezistence k antibiotikům u bakteriální mikroflóry vod akvarijních ryb po importu do České republiky. Veterinářství. Profi Press, s.r.o. GJ, 2015, vol. 2015, no. 10, p. 784-787. ISSN: 0506-8231.
  Detail

• 2014

  KOLEK, J.; SEDLÁŘ, K.; PROVAZNÍK, I.; PATÁKOVÁ, P. Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer. Genome Announcements, 2014, vol. 2, no. 2, p. 1-2. ISSN: 2169-8287.
  Detail | WWW | Full text in the Digital Library

  KOLEK, J.; SEDLÁŘ, K.; BRANSKÁ, B.; ŠKUTKOVÁ, H.; LINHOVÁ, M.; PROVAZNÍK, I.; MELZOCH, K.; PATÁKOVÁ, P. Clostridium pasteurianum NRRL B-598 Phenotype Matching Genotype?. Clostridium XIII book of abstracts. Shangai, China: 2014. p. 69-69.
  Detail | WWW

  GERŽOVÁ, L.; VÍDEŇSKÁ, P.; FALDYNOVÁ, M.; SEDLÁŘ, K.; PROVAZNÍK, I.; ČÍŽEK, A.; RYCHLÍK, I. Characterization of Microbiota Composition and Presence of Selected Antibiotic Resistance Genes in Carriage Water of Ornamental Fish. PLOS ONE, 2014, vol. 9, no. 8, p. e103865 (e103865 p.)ISSN: 1932-6203.
  Detail | WWW | Full text in the Digital Library

  SEDLÁŘ, K.; PROVAZNÍK, I. LTRFIND: A Novel Algorithm for Human de novo LTR Retrotransposons Identification. In Proceedings of the 20th Conference STUDENT EEICT 2014. Brno: LITERA, 2014. p. 242-246. ISBN: 978-80-214-4924- 4.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; VÍTEK, M.; PROVAZNÍK, I. Prokaryotic DNA Signal Downsampling for Fast Whole Genome Comparison. Advances in Intelligent Systems and Computing, 2014, vol. 283, no. 6, p. 373-383. ISSN: 2194-5357.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Bioinformatics for biotechnology research: data mining of Clostridium pasteurianum genome. BioTech 2014 and 6th Czech- Swiss Symposium with Exhibition Book of Abstracts. 1. Praha: Institute of Chemical Technology Prague, 2014. p. 64-64. ISBN: 978-80-7080-887- 0.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; KOLEK, J.; PATÁKOVÁ, P.; PROVAZNÍK, I. Identification and Characterization of Sol Operon in Clostridium Pasteurianum NRRL B- 598 Genome. In 2. mezinárodní chemicko-technologická konference, SBORNÍK ABSTRAKT A PLNÝCH TEXTŮ. 1. Mikulov: 2014. p. 1-5. ISBN: 978-80-86238-61- 6.
  Detail

  VÍDEŇSKÁ, P.; SEDLÁŘ, K.; LUKAC, M.; FALDYNOVÁ, M.; GERŽOVÁ, L.; ČEJKOVÁ, D.; ŠIŠÁK, F.; RYCHLÍK, I. Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life. PLOS ONE. California (US): Public Library of Science, 2014. p. 1-14. ISSN: 1932-6203.
  Detail | WWW | Full text in the Digital Library

  VÍDEŇSKÁ, P.; RAHMAN, M.; FALDYNOVÁ, M.; BABÁK, V.; MATULOVÁ, M.; PRUKNER-RADOVCIC, E.; KŘÍŽEK, I.; SMOLE-MOZINA, S.; KOVAC, J.; SZMOLKA, A.; NAGY, B.; SEDLÁŘ, K.; ČEJKOVÁ, D.; RYCHLÍK, I. Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia. PLOS ONE. California (US): Public Library of Science, 2014. p. e110076 (e110076 p.)ISSN: 1932-6203.
  Detail | WWW | Full text in the Digital Library

• 2013

  DOSTÁLEK, P.; KVASNIČKA, J.; CEJNAR, R.; VOHÁNKA, J.; MOKREJŠ, M.; HÁJKOVÁ, J.; BOBČÍKOVÁ, P.; BRÁNYIK, T.; MELZOCH, K.; SEDLÁŘ, K. Sekvenace genomu spodní pivovarské kvasinky. Kvasný průmysl, 2013, vol. 59, no. 10- 11, p. 313-316. ISSN: 0023- 5830.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H.; PROVAZNÍK, I. Compressed DNA signal representation for classification of long sequences. In XIII pracovní setkání fyzikálních chemiků a elektrochemiků. 1. Brno: LITERA BRNO, 2013. p. 135-136. ISBN: 978-80-7375-757- 1.
  Detail

  SEDLÁŘ, K. Klasifikace prokaryotických organismů založená na komprimovaných celogenomových signálech. In Sborník z konference: Student EEICT 2013. Brno: VUT Brno, 2013. p. 185-187. ISBN: 978-80-214-4694- 6.
  Detail

• 2012

  SEDLÁŘ, K.; ŠKUTKOVÁ, H. Predikce sekundární struktury proteinů pomocí neuronové sítě. In Sborní z konference: Student EEICT 2012. Brno: VUT Brno, 2012. p. 1-3. ISBN: 978-80-214-4462- 1.
  Detail

• 2011

  SEDLÁŘ, K.; SMERKOVÁ, K.; ŠKUTKOVÁ, H.; SOCHOR, J.; ADAM, V.; PROVAZNÍK, I.; KIZEK, R. DPPH aqueous antioxidant assay solution. In XI. Pracovní setkání fyzikálních chemiků a elektrochemiků. Brno: 2011. p. 250-254. ISBN: 978-80-7375-514- 0.
  Detail

  SEDLÁŘ, K.; ŠKUTKOVÁ, H. Bootstrap consensus tree in phylogeny reconstruction. In Sborník soutěže Student EEICT 2011. Brno: VUT v Brně, 2011. p. 130-132. ISBN: 978-80-214-4271- 9.
  Detail

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